Fixing Cubed Sphere Scalar Tracer #577
Workflow file for this run
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| name: Linux-Build | |
| on: | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| types: [opened, synchronize, reopened, ready_for_review] | |
| env: | |
| # Customize the CMake build type here (Release, Debug, RelWithDebInfo, etc.) | |
| BUILD_TYPE: Release | |
| BUILD_FLAG: "\"-fprofile-arcs -ftest-coverage\"" | |
| ACCOUNT: chengcli | |
| jobs: | |
| style-checker: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "🎉 The job was automatically triggered by a ${{ github.event_name }} event." | |
| - run: echo "🐧 This job is now running on a ${{ runner.os }} server hosted by ${{runner.name}}" | |
| - run: echo "🔎 The name of your branch is ${{ github.ref }} and your repository is ${{ github.repository }}." | |
| - run: echo "🖥️ The workspace, ${{ github.workspace }}, is now ready to test your code on the runner." | |
| - name: Install cpplint | |
| run: pip install cpplint | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: Run cpplint | |
| run: ./tools/check_style.sh | |
| build-cubed-sphere-2d: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libnetcdf-dev libpnetcdf-dev libeigen3-dev libmpich-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DTASK=exo2 -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config Debug -- -j2 | |
| build-cubed-sphere-3d: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libnetcdf-dev libpnetcdf-dev libeigen3-dev libmpich-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DTASK=exo3 -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config Debug -- -j2 | |
| build-non-hydrostatic: | |
| # The CMake configure and build commands are platform agnostic and should work equally well on Windows or Mac. | |
| # You can convert this to a matrix build if you need cross-platform coverage. | |
| # See: https://docs.github.com/en/free-pro-team@latest/actions/learn-github-actions/managing-complex-workflows#using-a-build-matrix | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libeigen3-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=Debug -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config Debug -- -j2 | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build/tests | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest -C ${{env.BUILD_TYPE}} | |
| - name: Generate coverage report | |
| working-directory: ${{github.workspace}}/build/tests | |
| run: | | |
| lcov --capture --directory . --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info # filter out system files | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info # filter out dependent library files | |
| lcov --list coverage.info | |
| - uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| files: ${{github.workspace}}/build/tests/coverage.info | |
| fail_ci_if_error: true | |
| functionalities: fix | |
| build-hydrostatic: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libeigen3-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=Debug -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} -DHYDROSTATIC=ON | |
| - name: build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j2 | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build/tests | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest -C ${{env.BUILD_TYPE}} | |
| - name: Generate coverage report | |
| working-directory: ${{github.workspace}}/build/tests | |
| run: | | |
| lcov --capture --directory . --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info # filter out system files | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info # filter out dependent library files | |
| lcov --list coverage.info | |
| - uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| files: ${{github.workspace}}/build/tests/coverage.info | |
| fail_ci_if_error: true | |
| functionalities: fix | |
| build-vapor2-cloud4: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libeigen3-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=Debug -DNVAPOR=2 -DNCLOUD=4 | |
| -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j2 | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build/tests | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest -C ${{env.BUILD_TYPE}} | |
| - name: Generate coverage report | |
| working-directory: ${{github.workspace}}/build/tests | |
| run: | | |
| lcov --capture --directory . --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info # filter out system files | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info # filter out dependent library files | |
| lcov --list coverage.info | |
| - uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| files: ${{github.workspace}}/build/tests/coverage.info | |
| fail_ci_if_error: true | |
| functionalities: fix | |
| build-vapor2-cloud5: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libeigen3-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=Debug -DNVAPOR=2 -DNCLOUD=5 | |
| -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j2 | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build/tests | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest -C ${{env.BUILD_TYPE}} | |
| - name: Generate coverage report | |
| working-directory: ${{github.workspace}}/build/tests | |
| run: | | |
| lcov --capture --directory . --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info # filter out system files | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info # filter out dependent library files | |
| lcov --list coverage.info | |
| - uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| files: ${{github.workspace}}/build/tests/coverage.info | |
| fail_ci_if_error: true | |
| functionalities: fix | |
| build-vapor1-cloud1-legacy: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libeigen3-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=Debug -DNVAPOR=1 -DNCLOUD=1 -DNPHASE_LEGACY=2 | |
| -DCMAKE_CXX_FLAGS=${{ env.BUILD_FLAG }} -DCMAKE_C_FLAGS=${{ env.BUILD_FLAG }} | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j2 | |
| - name: Test | |
| working-directory: ${{github.workspace}}/build/tests | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: ctest -C ${{env.BUILD_TYPE}} | |
| - name: Generate coverage report | |
| working-directory: ${{github.workspace}}/build/tests | |
| run: | | |
| lcov --capture --directory . --output-file coverage.info | |
| lcov --remove coverage.info '/usr/*' --output-file coverage.info # filter out system files | |
| lcov --remove coverage.info '*/_deps/*' --output-file coverage.info # filter out dependent library files | |
| lcov --list coverage.info | |
| - uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} | |
| with: | |
| files: ${{github.workspace}}/build/tests/coverage.info | |
| fail_ci_if_error: true | |
| functionalities: fix | |
| generate-ktable-with-netcdf: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: style-checker | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libnetcdf-dev libeigen3-dev | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -DTASK=ktable_earth -DACCOUNT=${{env.ACCOUNT}} -DTOKEN=${{secrets.ACCESS_TOKEN}} -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -B ${{github.workspace}}/build-netcdf | |
| - name: build | |
| # Build your program with the given configuration | |
| run: | | |
| cmake --build ${{github.workspace}}/build-netcdf --config ${{env.BUILD_TYPE}} -- -j2 | |
| - name: test generating ktable | |
| working-directory: ${{github.workspace}}/build-netcdf/bin | |
| # Execute tests defined by the CMake configuration. | |
| # See https://cmake.org/cmake/help/latest/manual/ctest.1.html for more detail | |
| run: python ./run_ktable_earth.py | |
| straka-2d: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: build-non-hydrostatic | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y lcov libnetcdf-dev libeigen3-dev nco | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip install -r requirements.txt | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh robert_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: straka_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/ | |
| - name: fetch the needed lfs file if the artifact does not exist | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2019-Li-snap/straka_output.nc | |
| - name: create build directory | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DTASK=straka | |
| - name: Build | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j4 | |
| - name: run simulation | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: ./straka.release -i straka.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| python3 ${{github.workspace}}/examples/2019-Li-snap/test_straka.py | |
| ${{github.workspace}}/build/bin/straka-test-main.nc | |
| ${{github.workspace}}/examples/2019-Li-snap/straka_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: straka_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/straka_output.nc | |
| robert-2d: | |
| if: github.event.pull_request.draft == false | |
| runs-on: [self-hosted, Linux, 8core] | |
| needs: build-non-hydrostatic | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh robert_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: robert_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/ | |
| - name: fetch the needed lfs file | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2019-Li-snap/robert_output.nc | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DTASK=robert | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j8 | |
| - name: run simulation | |
| env: | |
| PATH: $PATH:/usr/lib64/mpich/bin | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: mpiexec -n 8 ./robert.release -i robert2d.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| python3 ${{github.workspace}}/examples/2019-Li-snap/test_robert.py | |
| ${{github.workspace}}/build/bin/robert-test-main.nc | |
| ${{github.workspace}}/examples/2019-Li-snap/robert_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: robert_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/robert_output.nc | |
| robert-3d: | |
| if: github.event.pull_request.draft == false | |
| runs-on: [self-hosted, Linux, 16core] | |
| needs: build-non-hydrostatic | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh robert3d_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: robert3d_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/ | |
| - name: fetch the needed lfs file | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2019-Li-snap/robert3d_output.nc | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DTASK=robert | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j8 | |
| - name: run simulation | |
| env: | |
| PATH: $PATH:/usr/lib64/mpich/bin | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: mpiexec -n 8 ./robert.release -i robert3d.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| python3 ${{github.workspace}}/examples/2019-Li-snap/test_robert.py | |
| ${{github.workspace}}/build/bin/robert-test-main.nc | |
| ${{github.workspace}}/examples/2019-Li-snap/robert3d_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: robert3d_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/robert3d_output.nc | |
| bryan-2d: | |
| if: github.event.pull_request.draft == false | |
| runs-on: [self-hosted, Linux, 4core] | |
| needs: [straka-2d] | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh bryan_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: bryan_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/ | |
| - name: fetch the needed lfs file | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2019-Li-snap/bryan_output.nc | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DTASK=bryan | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j4 | |
| - name: run simulation | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: mpiexec -n 4 ./bryan.release -i bryan.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| ${{github.workspace}}/examples/2019-Li-snap/test_bryan.py | |
| ${{github.workspace}}/build/bin/bryan-test-main.nc | |
| ${{github.workspace}}/examples/2019-Li-snap/bryan_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: bryan_output.nc | |
| path: ${{github.workspace}}/examples/2019-Li-snap/bryan_output.nc | |
| shallow-xy: | |
| if: github.event.pull_request.draft == false | |
| runs-on: [self-hosted, Linux, 4core] | |
| needs: build-non-hydrostatic | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh swxy_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: swxy_output.nc | |
| path: ${{github.workspace}}/examples/2020-Li-polar-vortex/ | |
| - name: fetch the needed lfs file | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2020-Li-polar-vortex/swxy_output.nc | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DNETCDF=ON -DTASK=vortex | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j4 | |
| - name: run simulation | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: mpiexec -n 4 ./shallow_xy.release -i shallow_water.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| python3 ${{github.workspace}}/examples/2020-Li-polar-vortex/test_shallow_xy.py | |
| ${{github.workspace}}/build/bin/sw-test-main.nc | |
| ${{github.workspace}}/examples/2020-Li-polar-vortex/swxy_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: swxy_output.nc | |
| path: ${{github.workspace}}/examples/2020-Li-polar-vortex/swxy_output.nc | |
| polar-vortex: | |
| if: github.event.pull_request.draft == false | |
| runs-on: [self-hosted, Linux, 16core] | |
| needs: build-non-hydrostatic | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh intruder_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: intruder_output.nc | |
| path: ${{github.workspace}}/examples/2020-Li-polar-vortex/ | |
| - name: fetch the needed lfs file | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2020-Li-polar-vortex/intruder_output.nc | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DTASK=vortex | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j8 | |
| - name: run simulation | |
| env: | |
| PATH: $PATH:/usr/lib64/mpich/bin | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: mpiexec -n 12 ./polar_vortex.release -i fig_g_intruder.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| python3 ${{github.workspace}}/examples/2020-Li-polar-vortex/test_polar_vortex.py | |
| ${{github.workspace}}/build/bin/intruder-test-main.nc | |
| ${{github.workspace}}/examples/2020-Li-polar-vortex/intruder_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: intruder_output.nc | |
| path: ${{github.workspace}}/examples/2020-Li-polar-vortex/intruder_output.nc | |
| juno-mwr: | |
| if: github.event.pull_request.draft == false | |
| runs-on: ubuntu-latest | |
| needs: build-hydrostatic | |
| steps: | |
| - name: install dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libnetcdf-dev libeigen3-dev libcfitsio-dev nco | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip3 install -r requirements.txt | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DTASK=juno | |
| - name: build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j2 | |
| - name: run simulation | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: ./juno_mwr.release -i juno_mwr.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: Test | |
| working-directory: ${{github.workspace}}/examples/2024-JHu-juno-mwr | |
| run: echo "cheers" | |
| cubed-blast: | |
| if: github.event.pull_request.draft == false | |
| runs-on: [self-hosted, Linux, 8core] | |
| needs: build-cubed-sphere-2d | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| lfs: false | |
| - name: install python modules | |
| run: pip3 install -r requirements.txt | |
| - name: check if artifact exists | |
| run: echo "ARTIFACT_EXISTS=$(./tools/check_artifact.sh test_blast_output.nc)" >> $GITHUB_ENV | |
| - uses: actions/download-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'true' | |
| with: | |
| name: test_blast_output.nc | |
| path: ${{github.workspace}}/examples/2023-Chen-exo3/ | |
| - name: fetch the needed lfs file | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| run: git lfs pull -I examples/2023-Chen-exo3/test_blast_output.nc | |
| - name: create build directory | |
| # Configure CMake in a 'build' subdirectory. `CMAKE_BUILD_TYPE` is only required if you are using a single-configuration generator such as make. | |
| # See https://cmake.org/cmake/help/latest/variable/CMAKE_BUILD_TYPE.html?highlight=cmake_build_type | |
| run: cmake -B ${{github.workspace}}/build -DCMAKE_BUILD_TYPE=${{env.BUILD_TYPE}} -DNETCDF=ON -DTASK=exo2 | |
| - name: Build | |
| # Build your program with the given configuration | |
| run: cmake --build ${{github.workspace}}/build --config ${{env.BUILD_TYPE}} -- -j4 | |
| - name: run simulation | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: mpiexec -n 6 ./test_blast.release -i test_blast.inp | |
| - name: combile outputs | |
| working-directory: ${{github.workspace}}/build/bin | |
| run: python3 combine.py -o test | |
| - name: compare result | |
| run: > | |
| python3 ${{github.workspace}}/examples/2023-Chen-exo3/test_blast.py | |
| ${{github.workspace}}/build/bin/blast_48_cubed-test-main.nc | |
| ${{github.workspace}}/examples/2023-Chen-exo3/test_blast_output.nc | |
| - uses: actions/upload-artifact@v3 | |
| if: env.ARTIFACT_EXISTS == 'false' | |
| with: | |
| name: swxy_output.nc | |
| path: ${{github.workspace}}/examples/2020-Li-polar-vortex/test_blast_output.nc |