Java parsers for common mass-spectrometry and proteomics data formats
- mzML/mzXML
- pepXML
- protXML
- mzIdentML
- GPdb XML
- Agilent CEF
Thermo RAW on Windows in the next release.
Check out a small tutorial on how to use the library: http://www.batmass.org/tutorial/data-access-layer/
msftbx-with-deps.jar
- includes ass the dependencies in the jar file, can be used as ismsftbx-bin.jar
- this is the compiled library without the dependenciesmsftbx-deps.jar
- these are only the dependencies, to be used with msftbx-bin.jarmsftbx-src.jar
- sources for easy integration with IDE's code-completion