updated error in listing modules #8

	name: Test nf-core Modules

	on:
	push:
	branches:
	- 'github_actions_mza'
	pull_request:
	workflow_dispatch:

	env:
	GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
	NXF_ANSI_LOG: false
	NFT_VER: '0.9.2' # nf-test version

	jobs:
	discover-modules:
	name: Discover nf-core Modules
	runs-on: ubuntu-latest
	outputs:
	module_list: ${{ steps.get-modules.outputs.module_list }}
	steps:
	- name: Checkout Code
	uses: actions/checkout@v4

	- name: List nf-core Modules
	id: get-modules
	run: \|
	modules=$(find modules/nf-core -type d -maxdepth 1 -mindepth 1 -exec basename {} \; \| jq -R -s -c 'split("\n")[:-1]')
	echo "module_list=${modules}" >> $GITHUB_OUTPUT
	shell: bash

	test-modules:
	needs: discover-modules
	runs-on: ubuntu-latest
	strategy:
	fail-fast: false
	matrix:
	module: ${{ fromJSON(needs.discover-modules.outputs.module_list) }}
	name: Test nf-core Module ${{ matrix.module }}
	steps:
	- name: Clean Workspace
	run: rm -rf $GITHUB_WORKSPACE/*

	- name: Checkout Code
	uses: actions/checkout@v4
	with:
	fetch-depth: 0

	- name: Install Nextflow
	uses: nf-core/setup-nextflow@v1
	with:
	version: '24.10.1'

	- name: Cache nf-test
	uses: actions/cache@v3
	with:
	path: ~/.nf-test
	key: ${{ runner.os }}-nf-test-${{ env.NFT_VER }}

	- name: Run nf-test for ${{ matrix.module }}
	run: \|
	echo "Testing module: ${{ matrix.module }}"
	nf-test --module ${{ matrix.module }}

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