Test nf-core Modules

updated installation of nf-core/tools #13

Triggered via push November 20, 2024 20:45

anwarMZ

pushed 95f495c

github_actions_mza

Status Failure

Total duration 1m 37s

Artifacts –

nf-test.yml

on: push

Discover nf-core Modules

Matrix: test-modules

Annotations

40 errors and 40 warnings

Test nf-core Module checkm

Process completed with exit code 1.

Test nf-core Module bakta

Process completed with exit code 1.

Test nf-core Module fastp

Process completed with exit code 1.

Test nf-core Module bwa

Process completed with exit code 1.

Test nf-core Module igv

Process completed with exit code 1.

Test nf-core Module abricate

Process completed with exit code 1.

Test nf-core Module cat

Process completed with exit code 1.

Test nf-core Module cutadapt

Process completed with exit code 1.

Test nf-core Module centrifuge

Process completed with exit code 1.

Test nf-core Module fastqc

Process completed with exit code 1.

Test nf-core Module bracken

Process completed with exit code 1.

Test nf-core Module busco

Process completed with exit code 1.

Test nf-core Module dragonflye

Process completed with exit code 1.

Test nf-core Module bedtools

Process completed with exit code 1.

Test nf-core Module kraken2

Process completed with exit code 1.

Test nf-core Module abritamr

Process completed with exit code 1.

Test nf-core Module krakentools

Process completed with exit code 1.

Test nf-core Module custom

Process completed with exit code 1.

Test nf-core Module hamronization

Process completed with exit code 1.

Test nf-core Module amrfinderplus

Process completed with exit code 1.

Test nf-core Module krona

Process completed with exit code 1.

Test nf-core Module multiqc

Process completed with exit code 1.

Test nf-core Module porechop

Process completed with exit code 1.

Test nf-core Module nanocomp

Process completed with exit code 1.

Test nf-core Module mobsuite

Process completed with exit code 1.

Test nf-core Module minimap2

Process completed with exit code 1.

Test nf-core Module rasusa

Process completed with exit code 1.

Test nf-core Module prokka

Process completed with exit code 1.

Test nf-core Module shovill

Process completed with exit code 1.

Test nf-core Module trimmomatic

Process completed with exit code 1.

Test nf-core Module panaroo

Process completed with exit code 1.

Test nf-core Module quast

Process completed with exit code 1.

Test nf-core Module rgi

Process completed with exit code 1.

Test nf-core Module plasmidfinder

Process completed with exit code 1.

Test nf-core Module pirate

Process completed with exit code 1.

Test nf-core Module roary

Process completed with exit code 1.

Test nf-core Module pycoqc

Process completed with exit code 1.

Test nf-core Module trimgalore

Process completed with exit code 1.

Test nf-core Module samtools

Process completed with exit code 1.

Test nf-core Module untar

Process completed with exit code 1.

Test nf-core Module checkm

The following actions use a deprecated Node.js version and will be forced to run on node20: nf-core/setup-nextflow@v1. For more info: https://github.blog/changelog/2024-03-07-github-actions-all-actions-will-run-on-node20-instead-of-node16-by-default/

Test nf-core Module bakta

Test nf-core Module fastp

Test nf-core Module bwa

Test nf-core Module igv

Test nf-core Module abricate

Test nf-core Module cat

Test nf-core Module cutadapt

Test nf-core Module centrifuge

Test nf-core Module fastqc

Test nf-core Module bracken

Test nf-core Module busco

Test nf-core Module dragonflye

Test nf-core Module bedtools

Test nf-core Module kraken2

Test nf-core Module abritamr

Test nf-core Module krakentools

Test nf-core Module custom

Test nf-core Module hamronization

Test nf-core Module amrfinderplus

Test nf-core Module krona

Test nf-core Module multiqc

Test nf-core Module porechop

Test nf-core Module nanocomp

Test nf-core Module mobsuite

Test nf-core Module minimap2

Test nf-core Module rasusa

Test nf-core Module prokka

Test nf-core Module shovill

Test nf-core Module trimmomatic

Test nf-core Module panaroo

Test nf-core Module quast

Test nf-core Module rgi

Test nf-core Module plasmidfinder

Test nf-core Module pirate

Test nf-core Module roary

Test nf-core Module pycoqc

Test nf-core Module trimgalore

Test nf-core Module samtools

Test nf-core Module untar

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updated installation of nf-core/tools #13

Summary