set up pipeline prereqs

.github/workflows/wf_ci.yml

@@ -36,10 +36,27 @@ jobs:
         uses: nf-core/setup-nextflow@v1
         with:
           version: "${{ matrix.NXF_VER }}"
+
+      - name: Set up QEMU
+        uses: docker/setup-qemu-action@v3
 
       - name: Disk space cleanup
         uses: jlumbroso/free-disk-space@54081f138730dfa15788a46383842cd2f914a1be # v1.3.1
 
+      - name: Set up pipeline pre-reqs
+        run: |
+          curl https://object-arbutus.cloud.computecanada.ca/cidgohshare/eagle/adaptors.tar.gz
+          tar -xzvf adaptors.tar.gz
+          curl https://object-arbutus.cloud.computecanada.ca/cidgohshare/eagle/busco_baceria_odb10.tar.gz
+          tar -xzvf busco_baceria_odb10.tar.gz
+          curl https://object-arbutus.cloud.computecanada.ca/cidgohshare/eagle/confindr.tar.gz
+          tar -xzvf confindr.tar.gz
+          curl https://genome-idx.s3.amazonaws.com/kraken/minikraken2_v2_8GB_201904.tgz
+          tar -xzvf minikraken2_v2_8GB_201904.tgz
+          curl https://genome-idx.s3.amazonaws.com/centrifuge/p_compressed%2Bh%2Bv.tar.gz -o centrifuge.tar.gz
+          tar -xzvf centrifuge.tar.gz
+          ls
+
       - name: Run pipeline with test data
         # TODO nf-core: You can customise CI pipeline run tests as required
         # For example: adding multiple test runs with different parameters