panaroo fixed, eggnog checked. Ready for publication?

changelog.txt

@@ -3,9 +3,8 @@
   - Updated KEGG data from 2023-08-28 to 2024-08-13.
   - Added --status functionality.
   - Minor streamlining of code.
-  - Changed interpretation of panaroo summary_statistics in case of non-existent core_genome.
   - Hard-coded eggnog decorate gff "yes" (#114)
-  - Changed panaroo output marker from summary_statistics.txt to gene_absence_presence.Rtab
+  - Made the panaroo rule and report section robust to a missing alignment file when the core is empty. 
 
 2.11.1
   - Speed up: Eggnog reuses the proteins called by the default annotation tool instead of redoing it itself with prodigal.