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DO NOT MERGE: skip other CI jobs
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@mr-c
mr-c committed Nov 14, 2023
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217 changes: 0 additions & 217 deletions .github/workflows/ci-tests.yml
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Expand Up @@ -26,139 +26,6 @@ env:

jobs:

tox:
name: Tox
runs-on: ubuntu-22.04
strategy:
matrix:
py-ver-major: [3]
py-ver-minor: [8, 9, 10, 11, 12]
step: [lint, unit, bandit, mypy]

env:
py-semver: ${{ format('{0}.{1}', matrix.py-ver-major, matrix.py-ver-minor) }}
TOXENV: ${{ format('py{0}{1}-{2}', matrix.py-ver-major, matrix.py-ver-minor, matrix.step) }}

steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0

- name: Set up Singularity
if: ${{ matrix.step == 'unit' || matrix.step == 'mypy' }}
run: |
wget --no-verbose https://github.com/sylabs/singularity/releases/download/v3.10.4/singularity-ce_3.10.4-focal_amd64.deb
sudo apt-get install -y ./singularity-ce_3.10.4-focal_amd64.deb
- name: Give the test runner user a name to make provenance happy.
if: ${{ matrix.step == 'unit' || matrix.step == 'mypy' }}
run: sudo usermod -c 'CI Runner' "$(whoami)"

- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ env.py-semver }}
allow-prereleases: true
cache: pip
cache-dependency-path: |
requirements.txt
tox.ini
- name: Upgrade setuptools and install tox
run: |
pip install -U pip setuptools wheel
pip install "tox<4" "tox-gh-actions<3"
- name: MyPy cache
if: ${{ matrix.step == 'mypy' }}
uses: actions/cache@v3
with:
path: .mypy_cache/${{ env.py-semver }}
key: mypy-${{ env.py-semver }}

- name: Test with tox
run: tox

- name: Upload coverage to Codecov
if: ${{ matrix.step == 'unit' }}
uses: codecov/codecov-action@v3
with:
fail_ci_if_error: false
token: ${{ secrets.CODECOV_TOKEN }}

tox-style:
name: Linters
runs-on: ubuntu-20.04

strategy:
matrix:
step: [lintreadme, shellcheck, pydocstyle]

env:
py-semver: "3.12"
TOXENV: ${{ format('py312-{0}', matrix.step) }}

steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0

- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ env.py-semver }}
cache: pip

- name: Upgrade setuptools and install tox
run: |
pip install -U pip setuptools wheel
pip install "tox<4" "tox-gh-actions<3"
- if: ${{ matrix.step == 'pydocstyle' && github.event_name == 'pull_request'}}
name: Create local branch for diff-quality for PRs
run: git branch ${{github.base_ref}} origin/${{github.base_ref}}

- name: Test with tox
run: tox

clean_working_dir:
name: No leftovers
runs-on: ubuntu-22.04
env:
py-semver: "3.12"
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0

- name: Set up Singularity
run: |
wget --no-verbose https://github.com/sylabs/singularity/releases/download/v3.10.4/singularity-ce_3.10.4-focal_amd64.deb
sudo apt-get install -y ./singularity-ce_3.10.4-focal_amd64.deb
- name: Give the test runner user a name to make provenance happy.
run: sudo usermod -c 'CI Runner' "$(whoami)"

- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: ${{ env.py-semver }}
cache: pip

- name: install with test dependencies
run: |
pip install -U pip setuptools wheel
pip install --no-build-isolation -rtest-requirements.txt .[deps]
- name: make working directory read-only
run: |
mkdir .pytest_cache
chmod a-w .
- name: run tests
run: make test


conformance_tests:
name: CWL conformance
runs-on: ubuntu-22.04
Expand Down Expand Up @@ -217,87 +84,3 @@ jobs:
with:
fail_ci_if_error: false
token: ${{ secrets.CODECOV_TOKEN }}
release_test:
name: cwltool release test
runs-on: ubuntu-22.04

steps:
- uses: actions/checkout@v4

- name: Set up Singularity
run: |
wget --no-verbose https://github.com/sylabs/singularity/releases/download/v3.10.4/singularity-ce_3.10.4-jammy_amd64.deb
sudo apt-get install -y ./singularity-ce_3.10.4-jammy_amd64.deb
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.12
cache: pip
cache-dependency-path: |
requirements.txt
test-requirements.txt
- name: Give the test runner user a name to make provenance happy.
run: sudo usermod -c 'CI Runner' "$(whoami)"

- name: Install packages
run: |
pip install -U pip setuptools wheel
pip install virtualenv
- name: Release test
env:
RELEASE_SKIP: head
run: ./release-test.sh

build_test_container:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: record cwltool version
run: pip install -U setuptools wheel && pip install setuptools_scm[toml] && python setup.py --version
- name: build & test cwltool_module container
run: ./build-cwltool-docker.sh

macos:
name: Test on macos-latest
runs-on: macos-latest
env:
TOXENV: py312-unit
steps:
- uses: actions/checkout@v4
with:
fetch-depth: 0
- name: Set up Python
uses: actions/setup-python@v4
with:
python-version: 3.12
cache: pip
cache-dependency-path: |
requirements.txt
tox.ini
- name: Upgrade setuptools and install tox
run: |
pip install -U pip setuptools wheel
pip install "tox<4" "tox-gh-actions<3"
# # docker for mac install is not currently stable
# - name: 'SETUP MacOS: load Homebrew cache'
# uses: actions/cache@v3
# if: runner.os == 'macOS'
# with:
# path: |
# ~/Library/Caches/Homebrew/downloads/*--Docker.dmg
# key: brew-actions-setup-docker-1.0.11
# restore-keys: brew-actions-setup-docker-
# - name: setup docker on macos (default stable version)
# uses: docker-practice/actions-setup-docker@master
- name: Test with tox
run: tox
- name: Upload coverage to Codecov
uses: codecov/codecov-action@v3
with:
fail_ci_if_error: false
token: ${{ secrets.CODECOV_TOKEN }}

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