return the png files and move tiffs to new high res images directory

comob-project · Jan 16, 2025 · 32c6bf2 · 32c6bf2
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diff --git a/paper/sections/delays/Confuse.tiff → ...es/high_resolution_for_paper/Confuse.tiff b/paper/sections/delays/Confuse.tiff → ...es/high_resolution_for_paper/Confuse.tiff
diff --git a/paper/sections/delays/DDL.tiff → ...igures/high_resolution_for_paper/DDL.tiff b/paper/sections/delays/DDL.tiff → ...igures/high_resolution_for_paper/DDL.tiff
diff --git a/paper/sections/delays/Network.tiff → ...es/high_resolution_for_paper/Network.tiff b/paper/sections/delays/Network.tiff → ...es/high_resolution_for_paper/Network.tiff
diff --git a/paper/sections/delays/Results_1.tiff → .../high_resolution_for_paper/Results_1.tiff b/paper/sections/delays/Results_1.tiff → .../high_resolution_for_paper/Results_1.tiff
diff --git a/...igures_for_paper/basicmodel-confusion.eps → ...lution_for_paper/basicmodel-confusion.eps b/...igures_for_paper/basicmodel-confusion.eps → ...lution_for_paper/basicmodel-confusion.eps
diff --git a/...gures_for_paper/basicmodel-confusion.tiff → ...ution_for_paper/basicmodel-confusion.tiff b/...gures_for_paper/basicmodel-confusion.tiff → ...ution_for_paper/basicmodel-confusion.tiff
diff --git a/..._paper/basicmodel-hidden-firing-rates.eps → ..._paper/basicmodel-hidden-firing-rates.eps b/..._paper/basicmodel-hidden-firing-rates.eps → ..._paper/basicmodel-hidden-firing-rates.eps
diff --git a/...paper/basicmodel-hidden-firing-rates.tiff → ...paper/basicmodel-hidden-firing-rates.tiff b/...paper/basicmodel-hidden-firing-rates.tiff → ...paper/basicmodel-hidden-firing-rates.tiff
diff --git a/...for_paper/basicmodel-stimuli-examples.eps → ...for_paper/basicmodel-stimuli-examples.eps b/...for_paper/basicmodel-stimuli-examples.eps → ...for_paper/basicmodel-stimuli-examples.eps
diff --git a/...or_paper/basicmodel-stimuli-examples.tiff → ...or_paper/basicmodel-stimuli-examples.tiff b/...or_paper/basicmodel-stimuli-examples.tiff → ...or_paper/basicmodel-stimuli-examples.tiff
diff --git a/...paper/basicmodel-tuning-curves-hidden.eps → ...paper/basicmodel-tuning-curves-hidden.eps b/...paper/basicmodel-tuning-curves-hidden.eps → ...paper/basicmodel-tuning-curves-hidden.eps
diff --git a/...aper/basicmodel-tuning-curves-hidden.tiff → ...aper/basicmodel-tuning-curves-hidden.tiff b/...aper/basicmodel-tuning-curves-hidden.tiff → ...aper/basicmodel-tuning-curves-hidden.tiff
diff --git a/...paper/basicmodel-tuning-curves-output.eps → ...paper/basicmodel-tuning-curves-output.eps b/...paper/basicmodel-tuning-curves-output.eps → ...paper/basicmodel-tuning-curves-output.eps
diff --git a/...aper/basicmodel-tuning-curves-output.tiff → ...aper/basicmodel-tuning-curves-output.tiff b/...aper/basicmodel-tuning-curves-output.tiff → ...aper/basicmodel-tuning-curves-output.tiff
diff --git a/.../figures_for_paper/basicmodel-weights.eps → ...solution_for_paper/basicmodel-weights.eps b/.../figures_for_paper/basicmodel-weights.eps → ...solution_for_paper/basicmodel-weights.eps
diff --git a/...figures_for_paper/basicmodel-weights.tiff → ...olution_for_paper/basicmodel-weights.tiff b/...figures_for_paper/basicmodel-weights.tiff → ...olution_for_paper/basicmodel-weights.tiff
diff --git a/...r/sections/new_inh_model/blocked_inh.tiff → ...igh_resolution_for_paper/blocked_inh.tiff b/...r/sections/new_inh_model/blocked_inh.tiff → ...igh_resolution_for_paper/blocked_inh.tiff
diff --git a/paper/sections/delays/loss-and-dist.tiff → ...h_resolution_for_paper/loss-and-dist.tiff b/paper/sections/delays/loss-and-dist.tiff → ...h_resolution_for_paper/loss-and-dist.tiff
diff --git a/paper/sections/new_inh_model/lso_mso.tiff → ...es/high_resolution_for_paper/lso_mso.tiff b/paper/sections/new_inh_model/lso_mso.tiff → ...es/high_resolution_for_paper/lso_mso.tiff
diff --git a/...ctions/new_inh_model/network_diagram.tiff → ...resolution_for_paper/network_diagram.tiff b/...ctions/new_inh_model/network_diagram.tiff → ...resolution_for_paper/network_diagram.tiff
diff --git a/paper/sections/delays/Confuse.png b/paper/sections/delays/Confuse.png
diff --git a/paper/sections/delays/DDL.png b/paper/sections/delays/DDL.png
diff --git a/paper/sections/delays/Network.png b/paper/sections/delays/Network.png
diff --git a/paper/sections/delays/Results_1.png b/paper/sections/delays/Results_1.png
diff --git a/paper/sections/delays/loss-and-dist.png b/paper/sections/delays/loss-and-dist.png
diff --git a/paper/sections/new_inh_model/inhibition_model.md b/paper/sections/new_inh_model/inhibition_model.md
@@ -41,7 +41,7 @@ Since the absence of a clear and shared hypothesis in the literature, we decided
 Inspired by the neurophysiological data, we implemented a complex spiking neural network in Python using the NEST Simulator framework [@spreizer_2022_6368024]. The different neuronal populations composing the brainstem circuit and their interconnections are depicted in {ref}`network_diagram`.
 
 
-```{figure} sections/new_inh_model/network_diagram.tiff
+```{figure} sections/new_inh_model/network_diagram.png
 :label: network_diagram
 :width: 100%
 
@@ -99,7 +99,7 @@ The MSO response was tested both in physiological conditions and with blocked in
 As for the LSO response in {ref}`lso_mso`, in our results we obtained the desired subtraction process described in [](#inhib-intro): considering for the sake of simplicity the left LSO, when the sound arrives from a source placed at 90° (i.e., right), the right ear receives sounds earlier and more intensely than the left. As the azimuth angle proceeds toward 0° (frontal position), the firing rate of the left LSO increases while maintaining a constant slope. This steep segment is the most informative part of the left LSO response curve, as a high sensitivity to changing input azimuth angles is guaranteed. Once past 0°, the firing rate ceases to increase steadily, and the response flattens out to high-rate values. Here, the ipsilateral (left) excitation dominates due to louder sounds.
 
 
-```{figure} sections/new_inh_model/lso_mso.tiff
+```{figure} sections/new_inh_model/lso_mso.png
 :label: lso_mso
 :width: 100%
 
@@ -111,7 +111,7 @@ Regarding the MSO instead ({ref}`lso_mso`), the different curves represent the a
 Regarding simulations in which the MSO receives only excitatory inputs ({ref}`blocked_inh`), a loss in the coding of different contralateral angles is evidenced by a symmetric firing rate curve, with all the peak values being higher and shifted towards 0° angles with respect to the physiological activity, as measured experimentally in {cite:t}`Pecka2008`.
 
 
-```{figure} sections/new_inh_model/blocked_inh.tiff
+```{figure} sections/new_inh_model/blocked_inh.png
 :label: blocked_inh
 :width: 100%