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tweak map
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thesamovar committed May 10, 2024
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13 changes: 9 additions & 4 deletions paper/sections/notebook_map.md
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Expand Up @@ -4,10 +4,9 @@ The following lists the notebooks, authors, summary and related notebooks in thi

```{mermaid}
flowchart LR
SN[Starting Notebook] --> QS[Quick Start Notebook]
Dale --> QS
SN[Starting Notebook] --> FF[Filter-and-Fire Neuron Model]
Dale --> QS[Quick Start Notebook]
Tau --> QS
SN --> FF[Filter-and-Fire Neuron Model]
SN --> AON[Altering Output Neurons]
ATN --> AW[Analysing trained networks - workshop edition]
SN --> Dale[Sound localisation following Dale's law]
Expand All @@ -19,6 +18,9 @@ flowchart LR
SN --> V250[Version with 250 Hz Input]
SN --> ATN[Analysing trained networks]
SN --> Tau[Optimizing the membrane time constant]
Tau --> AnTau[Analysing solutions for different time constants]
V250 --> AnTau
ATN --> AnTau
```

## Introductory notebooks
Expand Down Expand Up @@ -69,6 +71,9 @@ flowchart LR
[](../research/Quick_Start_250HzClassification.ipynb), [](../research/Quick_Start_250HzClassification_CleanVersion.ipynb)
: Analysis of results with a higher frequency input stimulus and different membrane time constants for hidden and output layers. Conclusion is that smaller time constant matters for hidden layer but not for output layer. (Author: Dilay Fidan Erçelik.)

[](../research/time-constant-solutions.ipynb)
: Deeper analysis of strategies found by trained networks as time constants vary. Added firing rate regularisation. Extends [](../research/Optimizing-Membrane-Time-Constant.ipynb) (Author: Dan Goodman.)

[](../research/Workshop_1_Write_Up.md)
: Write-up of what happened at the first workshop. (Author: Marcus Ghosh.)

Expand All @@ -93,7 +98,7 @@ This subsection includes notebooks whose content got merged into an updated note
: Early work on analysing the strategies learned by trained networks. Folded into [](../research/Analysing-Trained-Networks-Part2.ipynb). (Author: Dan Goodman.)

[](../research/Optimizing-Membrane-Time-Constant.ipynb)
: Analyses how performance depends on membrane time constant. Folded into [TODO REMOVE THIS TEXT WHEN NOTEBOOK MERGED](../research/time-constant-solutions.ipynb). (Author: Zach Friedenberger, Chen Li, Peter Crowe.)
: Analyses how performance depends on membrane time constant. Folded into [](../research/time-constant-solutions.ipynb). (Author: Zach Friedenberger, Chen Li, Peter Crowe.)

[](../research/IE-neuron-distribution.ipynb)
: Fixed a mistake in an earlier version of [](../research/Dales_law.ipynb). (Author: Sara Evers.)

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