Actions update

compbiomed · Jan 5, 2024 · 927624e · 927624e
1 parent 206241e
commit 927624e
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Showing 2 changed files with 16 additions and 7 deletions.
diff --git a/.github/workflows/BioC-check.yaml b/.github/workflows/BioC-check.yaml
@@ -48,9 +48,6 @@ jobs:
           remotes::install_version("assertive.properties", version = "0.0.5", repos = "http://cran.us.r-project.org", upgrade = "never")
           remotes::install_version("assertive.types", version = "0.0.3", repos = "http://cran.us.r-project.org", upgrade = "never")
           remotes::install_version("multipanelfigure", version = "2.1.2", repos = "http://cran.us.r-project.org", upgrade = "never")
-          remotes::install_version("Matrix", version = "1.6.4", repos = "http://cran.us.r-project.org", upgrade = "never")
-          remotes::install_version("SeuratObject", version = "4.1.4", repos = "http://cran.us.r-project.org", upgrade = "never")
-          remotes::install_version("Seurat", version = "4.4.0", repos = "http://cran.us.r-project.org", upgrade = "never")
           BiocManager::install("celda")
 
         shell: Rscript {0}
@@ -59,12 +56,19 @@ jobs:
         with:
           extra-packages: |
             any::rcmdcheck
-          cache-version: 2
+          cache: false
 
       - name: Install XQuartz on macOS
         if: runner.os == 'macOS'
         run: brew install xquartz --cask
 
+      - name: Install Old Seurat
+        run: |
+          remotes::install_version("Matrix", version = "1.6.4", repos = "http://cran.us.r-project.org", upgrade = "never")
+          remotes::install_version("SeuratObject", version = "4.1.4", repos = "http://cran.us.r-project.org", upgrade = "never")
+          remotes::install_version("Seurat", version = "4.4.0", repos = "http://cran.us.r-project.org", upgrade = "never")
+        shell: Rscript {0}
+
       - name: Run BiocCheck
         run: |
           BiocManager::install("BiocCheck")

diff --git a/.github/workflows/R-CMD-check.yaml b/.github/workflows/R-CMD-check.yaml
@@ -83,15 +83,13 @@ jobs:
           remotes::install_version("assertive.types", version = "0.0.3", repos = "http://cran.us.r-project.org", upgrade = "never")
           remotes::install_version("multipanelfigure", version = "2.1.2", repos = "http://cran.us.r-project.org", upgrade = "never")
           remotes::install_version("Matrix", version = "1.6.4", repos = "http://cran.us.r-project.org", upgrade = "never")
-          remotes::install_version("SeuratObject", version = "4.1.4", repos = "http://cran.us.r-project.org", upgrade = "never")
-          remotes::install_version("Seurat", version = "4.4.0", repos = "http://cran.us.r-project.org", upgrade = "never")
           BiocManager::install("celda")
 
         shell: Rscript {0}
 
       - uses: r-lib/actions/setup-r-dependencies@v2
         with:
-          cache-version: 2
+          cache: false
           extra-packages: |
             any::rcmdcheck
           needs: check
@@ -100,6 +98,13 @@ jobs:
         if: runner.os == 'macOS'
         run: brew install xquartz --cask
 
+      - name: Install Old Seurat
+        run: |
+          remotes::install_version("Matrix", version = "1.6.4", repos = "http://cran.us.r-project.org", upgrade = "never")
+          remotes::install_version("SeuratObject", version = "4.1.4", repos = "http://cran.us.r-project.org", upgrade = "never")
+          remotes::install_version("Seurat", version = "4.4.0", repos = "http://cran.us.r-project.org", upgrade = "never")
+        shell: Rscript {0}
+
       - name: Check
         env:
           _R_CHECK_CRAN_INCOMING_: false