test for task warnings

tests/0509_Tasks/README.md

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+# 0509_Tasks
+
+tests errors/warnings related with setting up tasks
+
+## tests
+
+- 1D 2D, network, grid, transport, synaptic
+- appropriate warning when model has scan over parameter sets
+- appropriate warning when model has parameter scan
+- appropriate warning when model cross section
+- appropriate warning for model with a parameter estimation
+- appropriate warning for model with a sensitivity analysis
+- appropriate warning for model with optimization
+- appropriate warning for model with active time course sensitivities

tests/0509_Tasks/run.sh

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+#!/bin/bash
+
+# work out our folder name
+test=${PWD##*/}          # to assign to a variable
+test=${test:-/}          # to correct for the case where PWD=/
+
+fail=0
+
+# test model that has scan over parameter sets
+sbmodelr -t M1 ../sources/multimodel.cps 2 2 > output 2>&1
+
+# check that the correct warning is issued
+if ! grep -q " Warning: a scan of parameter sets exists in the original model but was not included in the new model." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = 1"
+fi
+
+# check that the other warning is also issued
+if ! grep -q " Warning: in Parameter scan task the scanned or sampled items were converted to those of the first unit only." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 2"
+fi
+
+# test model with a cross section
+sbmodelr -t Y ../sources/crossect.cps 2 2 > output 2>&1
+
+# check that the correct warning is issued for cross section
+if ! grep -q " Warning: the cross section task was updated to use \[X_1,1\] as variable." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 4"
+fi
+
+# check that the correct warning is issued for parameter scan
+if ! grep -q " Warning: in Parameter scan task the scanned or sampled items were converted to those of the first unit only." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 8"
+fi
+
+# test model with a sensitivity analysis
+sbmodelr -t B ../sources/sens.cps 2 > output 2>&1
+
+# check that the correct warning is issued
+if ! grep -q " Warning: sensitivies task is now using items of unit " output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 16"
+fi
+
+# test model with optimization
+sbmodelr -t X ../sources/opt.cps 2 > output 2>&1
+
+# check that the correct warning is issued
+if ! grep -q " Warning: in Optimization task the objective function and the search parameters were converted to those of the first unit only." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 32"
+fi
+
+# test model with parameter estimation
+sbmodelr -t E1 ../sources/pe_tcs.cps 2 > output 2>&1
+
+# check that the correct warning is issued
+if ! grep -q " Warning: Parameter Estimation task settings were not copied to the new model." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 64"
+fi
+
+# check that the correct warning is issued for time course sensitivities
+if ! grep -q " Warning: Time Course Sensitivities task settings were not copied to the new model." output; then
+  printf 'FAIL %s\n' "${test}"
+  let "fail = $fail + 128"
+fi
+
+if [ "$fail" = 0 ] ; then
+  printf 'PASS %s\n' "${test}"
+  rm output *.cps > /dev/null 2>&1
+fi
+
+exit $fail