added reindex.py

costero-e · Feb 16, 2023 · b1bcaa2 · b1bcaa2
1 parent 3aa813b
commit b1bcaa2
Showing 1 changed file with 28 additions and 0 deletions.
diff --git a/beacon/reindex.py b/beacon/reindex.py
@@ -0,0 +1,28 @@
+from pymongo.mongo_client import MongoClient
+import conf
+
+
+client = MongoClient(
+        "mongodb://{}:{}@{}:{}/{}?authSource={}".format(
+            conf.database_user,
+            conf.database_password,
+            conf.database_host,
+            conf.database_port,
+            conf.database_name,
+            conf.database_auth_source,
+        )
+    )
+
+
+client.beacon.analyses.create_index([("$**", "text")])
+client.beacon.biosamples.create_index([("$**", "text")])
+client.beacon.cohorts.create_index([("$**", "text")])
+client.beacon.datasets.create_index([("$**", "text")])
+client.beacon.genomicVariations.create_index([("$**", "text")])
+client.beacon.individuals.create_index([("$**", "text")])
+client.beacon.runs.create_index([("$**", "text")])
+
+#collection_name = client.beacon.analyses
+#print(collection_name.index_information())
+
+