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Update lineage_notes.txt #2887

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Update lineage_notes.txt #2887

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Over-There-Is Jan 30, 2025
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100 changes: 50 additions & 50 deletions lineage_notes.txt
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Expand Up @@ -1148,7 +1148,7 @@ LB.1.3.2 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2, C25413T
MH.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.2.1, S:T572I
LB.1.3.3 Alias of B.1.1.529.2.86.1.1.9.2.1.3.3, S:K182R, from #2723
LB.1.3.4 Alias of B.1.1.529.2.86.1.1.9.2.1.3.4, S:A376S, ORF1a:G432S, South Africa, from #2825
NZ.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.4.1, S:H445R, South Africa
NZ.1 Alias of B.1.1.529.2.86.1.1.9.2.1.3.4.1, S:H445R, South Africa, from #2825
LB.1.3.5 Alias of B.1.1.529.2.86.1.1.9.2.1.3.5, ORF3a:T64I
LB.1.4 Alias of B.1.1.529.2.86.1.1.9.2.1.4, ORF1a:A1473V
LB.1.4.1 Alias of B.1.1.529.2.86.1.1.9.2.1.4.1, S:R190S
Expand Down Expand Up @@ -1188,22 +1188,22 @@ LP.7 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.7, S:R190S, from sars-cov-2-variants
LP.8 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8, S:H445R, S:Q493E, S:F186L, ORF3a:P178L, Singapore/Philippines, from #2811
LP.8.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1, S:R190S, from sars-cov-2-variants/lineage-proposals#2199
LP.8.1.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1, S:K679R, from sars-cov-2-variants/lineage-proposals#2199
NY.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.1, S:P85S
NY.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.1, S:P85S, from #2861
NY.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.2, ORF1a:T2846I
NY.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.3, S:R765L
NY.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.3, S:R765L, from #2874
NY.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.4, ORF1b:V1649I
NY.5 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.5, ORF1a:F843Y
NY.6 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.6, S:A475V
NY.6 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.6, S:A475V, on LP.8.1.1 polytomy directly, from #2872
NY.7 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.1.1.7, S:T22N
LP.8.1.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.2, S:N487D, from sars-cov-2-variants/lineage-proposals#2199
NW.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.2.1, S:A1174V, ORF3a:L101F
NW.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.2.1, S:A1174V, ORF3a:L101F, from sars-cov-2-variants/lineage-proposals#2199
LP.8.1.3 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.3, S:Q677H, from #2876
LP.8.1.4 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.4, C16308T, Brazil
LP.8.1.5 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.5, ORF1a:K3353R
LP.8.1.6 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.6, S:T22N
LP.8.1.7 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.7, ORF1b:V980I
LP.8.1.6 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.6, S:T22N, on LP.8.1 polytomy directly, from #2868
LP.8.1.7 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.7, ORF1b:V980I, ORF10:Q29*, from #2869
LP.8.1.8 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.8, N:A134V
LP.8.1.9 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.9, S:A475V
LP.8.1.9 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.1.9, S:A475V, on LP.8.1 polytomy directly, #2853
LP.8.2 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.2, S:M153I, S:L176F, on ORF1b:P1452L branch, from sars-cov-2-variants/lineage-proposals#2199
LP.8.2.1 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.8.2.1, S:A475V, ORF1a:T1246I, from sars-cov-2-variants/lineage-proposals#2199
LP.9 Alias of B.1.1.529.2.86.1.1.11.1.1.1.3.9, S:H445P, S:L176F, ORF1a:L1191F
Expand Down Expand Up @@ -1270,11 +1270,11 @@ KP.2.9 Alias of B.1.1.529.2.86.1.1.11.1.2.9, S:T572I, from sars-cov-2-variants/l
KP.2.10 Alias of B.1.1.529.2.86.1.1.11.1.2.10, S:F59S, Singapore, from sars-cov-2-variants/lineage-proposals#1553
KP.2.11 Alias of B.1.1.529.2.86.1.1.11.1.2.11, S:F56V, ORF1a:T2093I, England, from sars-cov-2-variants/lineage-proposals#1520
KP.2.12 Alias of B.1.1.529.2.86.1.1.11.1.2.12, S:V1176F, G25088T, Australia, from sars-cov-2-variants/lineage-proposals#1550
KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, C9565T, C24553T, USA/Canada
KP.2.13 Alias of B.1.1.529.2.86.1.1.11.1.2.13, S:K478E, N:P6T, ORF9b:D2E, C9565T, C24553T, USA/Canada
KP.2.14 Alias of B.1.1.529.2.86.1.1.11.1.2.14, S:T22N, S:S31F, S:G184V, from sars-cov-2-variants/lineage-proposals#1578
KP.2.14.1 Alias of B.1.1.529.2.86.1.1.11.1.2.14.1, S:T572I
KP.2.14.2 Alias of B.1.1.529.2.86.1.1.11.1.2.14.2, S:A435S
KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:31del, USA/Canada
KP.2.14.2 Alias of B.1.1.529.2.86.1.1.11.1.2.14.2, S:A435S, ORF1a:S443T, ORF1a:T2183I
KP.2.15 Alias of B.1.1.529.2.86.1.1.11.1.2.15, A10861G, S:S31del, USA/Canada
KP.2.15.1 Alias of B.1.1.529.2.86.1.1.11.1.2.15.1, S:T572I, from #2711
KP.2.16 Alias of B.1.1.529.2.86.1.1.11.1.2.16, ORF8:F6S
KP.2.17 Alias of B.1.1.529.2.86.1.1.11.1.2.17, S:G35R, C23758T, C7765T, T14418C, Singapore
Expand All @@ -1294,16 +1294,16 @@ KP.2.27 Alias of B.1.1.529.2.86.1.1.11.1.2.27, S:T572I, C3811T, C9857T, A23080G,
KP.3 Alias of B.1.1.529.2.86.1.1.11.1.3, S:Q493E, from sars-cov-2-variants/lineage-proposals#1410
KP.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1, G15372T, A19722G
KP.3.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1, ORF1a:S4286C, C12616T, S:S31del, Spain, from sars-cov-2-variants/lineage-proposals#1563
MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I, from sars-cov-2-variants/lineage-proposals#1638
MC.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.1, S:A942S, C13297T, C14220T, from sars-cov-2-variants/lineage-proposals#1932
MC.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1, S:T572I, most with C13297T, from sars-cov-2-variants/lineage-proposals#1638
MC.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.1, S:A942S, on C14220T branch, from sars-cov-2-variants/lineage-proposals#1932
MC.1.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.1.1, ORF1a:P1096L, C13264T, Australia-SA
MC.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.2, S:A1174V, sibling of MC.1.1, from sars-cov-2-variants/lineage-proposals#2206
MC.1.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.2, S:A1174V, on C14220T branch, from sars-cov-2-variants/lineage-proposals#2206
MC.1.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.3, ORF1a:E977D
MC.1.3.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.3.1, S:F4L, from sars-cov-2-variants/lineage-proposals#2192
MC.1.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.4, ORF1a:I671V
MC.1.5 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.5, T1030C, C19875T
MC.1.6 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.6, C589T, C9857T
MC.1.7 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.7, S:A942S, ORF1a:L3806M, A11500G, A20559G
MC.1.7 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.1.7, S:A942S, ORF1a:L3806M, A11500G, A20559G, without C13297T
MC.2 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.2, S:A845S, from sars-cov-2-variants/lineage-proposals#1707
MC.2.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.2.1, S:R237K, from sars-cov-2-variants/lineage-proposals#1707
MC.3 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.3, S:G72R, Spain, from sars-cov-2-variants/lineage-proposals#1733
Expand Down Expand Up @@ -1338,8 +1338,8 @@ MC.13.4 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.13.4, S:T572I, ORF1a:G445V
MC.14 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.14, S:T259R, from sars-cov-2-variants/lineage-proposals#1815
MC.15 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.15, S:K182R
MC.16 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.16, G2890A
MC.17 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.17, S:A575S, C5512T, from sars-cov-2-variants/lineage-proposals#1989
MC.17.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.17.1, S:R346T
MC.17 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.17, S:A575S, C5512T, from #2782
MC.17.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.17.1, S:R346T, from #2782
MC.18 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.18, S:N185D, ORF1a:G465S, Spain/Canada, from sars-cov-2-variants/lineage-proposals#2075
MC.19 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.19, S:R346T, from sars-cov-2-variants/lineage-proposals#1809
MC.19.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.19.1, S:H445R
Expand All @@ -1361,7 +1361,7 @@ MC.28.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.28.1, S:C1235F, S:A435S, from sar
MC.28.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.28.1.1, S:R346T
MC.29 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.29, ORF1a:N615K
MC.30 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.30, C1093T, T15750C
MC.30.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.30.1, ORF1b:P1645S, NA119T, C23896T, C26801T
MC.30.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.30.1, ORF1b:P1645S, N:A119T, C23896T, C26801T
MC.30.1.1 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.30.1.1, S:T572I, S:A435S
MC.31 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.31, S:R346T, S:A435S, ORF1a:L552F, ORF1a:S1825N
MC.32 Alias of B.1.1.529.2.86.1.1.11.1.3.1.1.32, ORF1a:T1840I
Expand Down Expand Up @@ -1418,9 +1418,9 @@ ML.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.1, S:681H, from sars-cov-2-variants/
ML.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.3.2, S:Q677H, USA
KP.3.3.4 Alias of B.1.1.529.2.86.1.1.11.1.3.3.4, ORF1a:I1367L, from #2707
MR.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.4.1, S:S31del, ORF1a:V1236I, from #2704
KP.3.3.5 Alias of B.1.1.529.2.86.1.1.11.1.3.3.5, S:A435S, Chile, from #2844
KP.3.3.5 Alias of B.1.1.529.2.86.1.1.11.1.3.3.5, S:S31del, S:A435S, Chile, from #2844
KP.3.3.6 Alias of B.1.1.529.2.86.1.1.11.1.3.3.6, S:S31del, S:D138H, Oceania
KP.3.3.7 Alias of B.1.1.529.2.86.1.1.11.1.3.3.7, ORF1a:T2093I, ORF1a:L642F
KP.3.3.7 Alias of B.1.1.529.2.86.1.1.11.1.3.3.7, ORF1a:T2093I, ORF1a:L642F, Japan
KP.3.3.8 Alias of B.1.1.529.2.86.1.1.11.1.3.3.8, ORF1b:A1603S, S:F59S
PB.1 Alias of B.1.1.529.2.86.1.1.11.1.3.3.8.1, S:T22N, ORF1a:L3201P, Japan
PB.2 Alias of B.1.1.529.2.86.1.1.11.1.3.3.8.2, S:T22N, S:I794T
Expand Down Expand Up @@ -1458,7 +1458,7 @@ NC.1.2.1 Alias of B.1.1.529.2.86.1.1.13.1.1.1.1.1.2.1, S:K679T
NC.1.2.2 Alias of B.1.1.529.2.86.1.1.13.1.1.1.1.1.2.2, ORF3a:E181G
NC.2 Alias of B.1.1.529.2.86.1.1.13.1.1.1.1.2, ORF1a:G112S, from sars-cov-2-variants/lineage-proposals#1764
KS.1.1.2 Alias of B.1.1.529.2.86.1.1.13.1.1.1.2, ORF1a:L2146F, C19716T
KS.1.1.3 Alias of B.1.1.529.2.86.1.1.13.1.1.1.3, S:A575S, ORF1a:H1160Y, Russia
KS.1.1.3 Alias of B.1.1.529.2.86.1.1.13.1.1.1.3, S:A575S, ORF1a:D1160Y, ORF1a:H1610Y, Russia
KS.1.2 Alias of B.1.1.529.2.86.1.1.13.1.1.2, S:T678I, Russia
KS.1.3 Alias of B.1.1.529.2.86.1.1.13.1.1.3, S:V642A, Dominican Republic, from sars-cov-2-variants/lineage-proposals#1535
KS.1.4 Alias of B.1.1.529.2.86.1.1.13.1.1.4, C22414T, S:R237K, from sars-cov-2-variants/lineage-proposals#1752
Expand Down Expand Up @@ -1542,15 +1542,15 @@ LQ.1.2 Alias of B.1.1.529.2.86.1.1.18.1.1.2, ORF3a: T221I
LQ.2 Alias of B.1.1.529.2.86.1.1.18.1.2, S:N556K, China,from sars-cov-2-variants/lineage-proposals#1414
LQ.3 Alias of B.1.1.529.2.86.1.1.18.1.3, ORF1a:T1761I, Russia
JN.1.18.2 Alias of B.1.1.529.2.86.1.1.18.2, S:F59S, after C4331T, T22321C, from sars-cov-2-variants/lineage-proposals#1441
LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V from #2654
LZ.1 Alias of B.1.1.529.2.86.1.1.18.2.1, S:F456L (T22930A), N:A152T, ORF1a:I740V, on T23377C branch, from #2654
LZ.1.1 Alias of B.1.1.529.2.86.1.1.18.2.1.1, S:P217S, S:N1125S from #2654
LZ.2 Alias of B.1.1.529.2.86.1.1.18.2.2, S:F456L (T22928C), ORF1a:K1226E, China, from sars-cov-2-variants/lineage-proposals#1089
LZ.2 Alias of B.1.1.529.2.86.1.1.18.2.2, S:F456L (T22928C), on ORF1a:K1226E branch, China, from sars-cov-2-variants/lineage-proposals#1089
LZ.2.1 Alias of B.1.1.529.2.86.1.1.18.2.2.1, ORF10:Q29*
LZ.2.1.1 Alias of B.1.1.529.2.86.1.1.18.2.2.1.1, S:K478E, from sars-cov-2-variants/lineage-proposals#2092
LZ.2.1.2 Alias of B.1.1.529.2.86.1.1.18.2.2.1.2, S:K478T (rev), from sars-cov-2-variants/lineage-proposals#1909
LZ.2.2 Alias of B.1.1.529.2.86.1.1.18.2.2.2, T2032C, C19041T, China
LZ.3 Alias of B.1.1.529.2.86.1.1.18.2.3, S:T572I, on ORF1a:K1226E branch with LZ.2
LZ.4 Alias of B.1.1.529.2.86.1.1.18.2.4, S:R190S, on T23377C branch with LZ.1
LZ.3 Alias of B.1.1.529.2.86.1.1.18.2.3, S:T572I, on ORF1a:K1226E branch
LZ.4 Alias of B.1.1.529.2.86.1.1.18.2.4, S:R190S, on T23377C branch
LZ.5 Alias of B.1.1.529.2.86.1.1.18.2.5, C19185T
JN.1.18.3 Alias of B.1.1.529.2.86.1.1.18.3, S:F456V (T22928G), from sars-cov-2-variants/lineage-proposals#1253
MA.1 Alias of B.1.1.529.2.86.1.1.18.3.1, S:R190S, S:31del, from sars-cov-2-variants/lineage-proposals#1635
Expand Down Expand Up @@ -1711,12 +1711,12 @@ MF.2 Alias of B.1.1.529.2.86.1.1.65.1.2, S:S60P, S:W64L from #2461
JN.1.66 Alias of B.1.1.529.2.86.1.1.66, S:H445P, S:F456L (T22930A), S:T1117I, ORF1a:L2146F, ORF3a:L106F, Iceland/Sweden
JN.1.67 Alias of B.1.1.529.2.86.1.1.67, M:L46F, from #2531
JN.1.67.1 Alias of B.1.1.529.2.86.1.1.67.1, S:F456L, China, from #2531
MZ.1 Alias of B.1.1.529.2.86.1.1.67.1.1, S:S31F
MZ.2 Alias of B.1.1.529.2.86.1.1.67.1.2, T177C, China
MZ.3 Alias of B.1.1.529.2.86.1.1.67.1.3, S:R346T, S:F59S, China
MZ.1 Alias of B.1.1.529.2.86.1.1.67.1.1, S:S31F, on G1126A branch
MZ.2 Alias of B.1.1.529.2.86.1.1.67.1.2, T177C, on G1126A branch, China
MZ.3 Alias of B.1.1.529.2.86.1.1.67.1.3, S:R346T, S:F59S, on G1126A branch, China
MZ.4 Alias of B.1.1.529.2.86.1.1.67.1.4, S:K478T (rev), N:T379A, China
MZ.4.1 Alias of B.1.1.529.2.86.1.1.67.1.4.1, S:V1264L
MZ.5 Alias of B.1.1.529.2.86.1.1.67.1.5, S:T572I
MZ.5 Alias of B.1.1.529.2.86.1.1.67.1.5, S:T572I, on G1126A branch
JN.1.68 Alias of B.1.1.529.2.86.1.1.68, C19011T
JN.1.68.1 Alias of B.1.1.529.2.86.1.1.68.1, S:K679R, C9836T, from sars-cov-2-variants/lineage-proposals#1350
JN.1.69 Alias of B.1.1.529.2.86.1.1.69, C16329T
Expand Down Expand Up @@ -4504,11 +4504,11 @@ XDV.1.4 S:I1114T
XDV.1.5 S:G184S, S:K478I, China, from sars-cov-2-variants/lineage-proposals#1840
XDV.1.5.1 ORF1a:H1141Y, ORF1a:A1473V, ORF3a:R134H, China
NB.1 Alias of XDV.1.5.1.1, S:T22N, S:F59S, ORF1a:I2709V, ORF1a:P4197S, China, from sars-cov-2-variants/lineage-proposals#1840
NB.1.1 Alias of XDV.1.5.1.1.1, S:I478T (rev), from sars-cov-2-variants/lineage-proposals#2280
NB.1.2 Alias of XDV.1.5.1.1.2, S:V1264L, China
NB.1.3 Alias of XDV.1.5.1.1.3, G19824A
NB.1.3.1 Alias of XDV.1.5.1.1.3.1, S:T572I
NB.1.4 Alias of XDV.1.5.1.1.4, C26801T
NB.1.1 Alias of XDV.1.5.1.1.1, S:I478T (rev), on ORF1b:D275Y branch, from sars-cov-2-variants/lineage-proposals#2280
NB.1.2 Alias of XDV.1.5.1.1.2, S:V1264L, China, from sars-cov-2-variants/lineage-proposals#2307
NB.1.3 Alias of XDV.1.5.1.1.3, G19824A, on ORF1b:D275Y branch
NB.1.3.1 Alias of XDV.1.5.1.1.3.1, S:T572I, from sars-cov-2-variants/lineage-proposals#2299
NB.1.4 Alias of XDV.1.5.1.1.4, C26801T, on ORF1b:D275Y branch
NB.1.5 Alias of XDV.1.5.1.1.5, ORF1a:A117T
XDV.1.6 S:K478T, S:A263T, ORF1a:V1783I, ORF1a:E1209D
XDV.1.7 ORF1a:D2980N, C8950T, China
Expand All @@ -4521,9 +4521,9 @@ XDV.1.11 T4057C
XDW Recombinant lineage of JN.2 (T1030C branch), XDA (breakpoint between 23424-23603), Japan, from sars-cov-2-variants/lineage-proposals#1471
XDY Recombinant lineage of LB.1.2.1 and KP.3.2 (breakpoint between 22131-22599), Sweden/Spain, from sars-cov-2-variants/lineage-proposals#1559
XDY.1 S:A435S, S:A1174T, N:R36Q, ORF7a:P34L, ORF9b:D33N, France, from sars-cov-2-variants/lineage-proposals#2014
XDY.1.1 S:T572I
XDY.2 S:Q677H, S:R346T
XDY.3 S:A435S, ORF1a:T4129I
XDY.1.1 S:T572I, from sars-cov-2-variants/lineage-proposals#2014
XDY.2 S:Q677H, S:R346T, from #2866
XDY.3 S:A435S, ORF1a:T4129I, from sars-cov-2-variants/lineage-proposals#2281
XDY.4 S:R346T
XDY.5 G18756A
XDY.5.1 S:T572I, USA
Expand All @@ -4532,16 +4532,16 @@ XDY.7 C6781T
XDZ Recombinant lineage of JG.3 and JN.1.1.10 (breakpoint between 11043-12788), Europe/North America, from sars-cov-2-variants/lineage-proposals#1356
XEA Recombinant lineage of JN.1.63.1 and EG.5 (breakpoint between 27057-27915), East Asia
XEB Recombinant lineage of FL.15, JN.1.4+T18453C, FL.15 (breakpoints at 774-896 and 26834-27809), USA, from sars-cov-2-variants/lineage-proposals#1290
XEC Recombinant lineage of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), Europe (Germany), from #2717
XEC.1 S:K182R, ORF1a:L4182F, on ORF1a:A599T branch, France/Ireland/Canada, from sars-cov-2-variants/lineage-proposals#1869
XEC Recombinant lineage of KS.1.1 (JN.1.13.1.1.1) and KP.3.3 (breakpoint 21738-22599), most with ORF1a:A599T, Europe (Germany), from #2717
XEC.1 S:K182R, ORF1a:L4182F, France/Ireland/Canada, from sars-cov-2-variants/lineage-proposals#1869
XEC.2 ORF1a:I1367L, lacking ORF1a:A599T, from sars-cov-2-variants/lineage-proposals#1908
XEC.2.1 ORF1a:V3336F, from sars-cov-2-variants/lineage-proposals#2135
XEC.2.2 ORF1a:I280T
XEC.2.3 N:T379I, T16476C, from sars-cov-2-variants/lineage-proposals#2104
XEC.2.3.1 S:G181V, from sars-cov-2-variants/lineage-proposals#2104
XEC.3 S:E1202Q, from sars-cov-2-variants/lineage-proposals#2088
XEC.4 S:T572I, from sars-cov-2-variants/lineage-proposals#2087
XEC.4.1 T23584C, C27294T, C29353T, Australia
XEC.4.1 T23584C, C27294T, C29353T, on C6312T branch, Australia
XEC.5 S:G72R, from sars-cov-2-variants/lineage-proposals#2088
XEC.6 S:S680F, from sars-cov-2-variants/lineage-proposals#2088
XEC.7 S:W152R, S:P1263Q, from sars-cov-2-variants/lineage-proposals#2088
Expand All @@ -4554,9 +4554,9 @@ XEC.13 S:S98F, from sars-cov-2-variants/lineage-proposals#2088
XEC.14 ORF1a:A138T
XEC.15 ORF1b:M2322I, C9803T
XEC.16 S:T678I, from sars-cov-2-variants/lineage-proposals#2088
XEC.17 S:T95I, on ORF1a:A599T branch, Israel, from #2879
XEC.18 G28378T
XEC.19 4423T
XEC.17 S:T95I, Israel, from #2879
XEC.18 ORF9b:R32L, from #2813
XEC.19 C4423T
XED Recombinant lineage of JN.1.4 and LF.1.1.1 (breakpoint 19210-21652), from #2691
XEE Recombinant lineage of KP.2.3.7 and JN.1* (breakpoint 24873-25592), from #2721
XEF Recombinant lineage of LB.1.4 and KP.3 (breakpoint 22600-23038), from sars-cov-2-variants/lineage-proposals#1855
Expand All @@ -4576,7 +4576,7 @@ XEK.5 C478T
XEK.6 S:Y1155F
XEL Recombinant lineage of KS.1.1.2, JN.1 (breakpoint: 22929-24820), South Korea, from #2751
XEL.1 S:V1264L
XEL.2 S:V159I
XEL.2 S:V159I, Russia
XEL.3 ORF1a:P971L
XEL.4 S:R190S, S:S680F
XEL.5 S:M177T, ORF1a:F586S
Expand All @@ -4591,13 +4591,13 @@ XER Recombinant lineage of KS.2, LF.7 (breakpoint: 18349-21626), from sars-cov-2
XES Recombinant lineage of KP.2.3.15, KP.3.3 (breakpoint: 22001-22598), from #2783
XET Recombinant lineage of KP.1.1.1., KP.3.1.1 (breakpoint: 20105-21652), from sars-cov-2-variants/lineage-proposals#2302
XEU Recombinant lineage of XEK, XEC.8 (breakpoint: 3506-7112), from sars-cov-2-variants/lineage-proposals#2298
XEV Recombinant lineage of KP.3.1.1, XEC.18 (breakpoint: 12617-13120)
XEW Recombinant lineage of KP.3.1.1, XEC.8 (breakpoint: 13122-15371)
XEY Recombinant lineage of MC.29, XEC (breakpoint: 17335-18656)
XEZ Recombinant lineage of MC.6, XEC (breakpoint: 15373-17333)
XFA Recombinant lineage of MC.1.1.1, XEC.4.1 (breakpoint: 13297-15371), from #2878
XEV Recombinant lineage of KP.3.1.1, XEC.18 (breakpoint: 12617-13120), from #2813
XEW Recombinant lineage of KP.3.1.1, XEC.8 (breakpoint: 13122-15371), from #2842
XEY Recombinant lineage of MC.29, XEC (breakpoint: 17746-18656)
XEZ Recombinant lineage of MC.6, XEC (breakpoint: 15373-17333), from sars-cov-2-variants/lineage-proposals#2272
XFA Recombinant lineage of MC.1.1.1, XEC.4.1 (breakpoint: 13298-14219), from #2878
XFB Recombinant lineage of MC.24, XDY.1.1, MC.24 (breakpoints: 19723-22110,23278-25081), from #2877
XFC Recombinant lineage of LP.8.1.1, LF.7, LP.8.1.1 (breakpoints: 8818-122891,22120-22892), from sars-cov-2-variants/lineage-proposals#2323
XFC Recombinant lineage of LP.8.1.1, LF.7, LP.8.1.1 (breakpoints: 8818-12891,22120-22892), from sars-cov-2-variants/lineage-proposals#2323
XFD Recombinant lineage of MC.36.1, XEC (breakpoint: 19723-21626)
XFE Recombinant lineage of MC.37, XEC.19 (breakpoint: 19723-21626)
XFF Recombinant lineage of LB.1.3, MZ.4.1 (breakpoint: 22599-22994)
Expand Down