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Add 001075 example figure #104

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merged 4 commits into from
Oct 1, 2024
Merged

Add 001075 example figure #104

merged 4 commits into from
Oct 1, 2024

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CodyCBakerPhD
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Reproduction of Fig 1d from https://www.nature.com/articles/s41586-023-06683-4#data-availability

A small number of traces differ and I will go over some possible reasons why with the group when I meet with them tomorrow

Given that 90% of the traces match, I'd say it's pretty trustworthy though

Ran out of time to complete the top axis stimulation target labels (patterned optogenetic data only specifies the approximate VOXEL that was targeted - finding the nearest ROI with a NeuroPAL label is certainly possible from the data though - probably a good exercise for a NeurodataRehack)

@CodyCBakerPhD
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@CodyCBakerPhD
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Ran out of time to complete the top axis stimulation target labels (patterned optogenetic data only specifies the approximate VOXEL that was targeted - finding the nearest ROI with a NeuroPAL label is certainly possible from the data though - probably a good exercise for a NeurodataRehack)

It looks like I do have a little bit more time left to spend next week though, so I'll also ask them what they'd prefer I try to polish in terms of figures (would enhance in a separate follow-up PR though)

@CodyCBakerPhD CodyCBakerPhD marked this pull request as draft September 20, 2024 16:04
@CodyCBakerPhD
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Converting to draft

TODO:

  • add ogen target labels from source data and include in example notebook
  • add README with a nav index for easy reference and sharing of how to access and cite dataset

@CodyCBakerPhD CodyCBakerPhD marked this pull request as ready for review October 1, 2024 01:55
@CodyCBakerPhD
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@bendichter OK, this is good to go!

@bendichter bendichter merged commit 10c444a into dandi:master Oct 1, 2024
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2 participants