update changes

databio · Oct 22, 2020 · 587f9d8 · 587f9d8
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diff --git a/docs/changelog.md b/docs/changelog.md
@@ -1,7 +1,7 @@
 # Change log
 All notable changes to this project will be documented in this file.
 
-## [0.9.8] -- 2020-10-19
+## [0.9.8] -- 2020-10-22
 
 ### Added
  - Add Q1 FRiP for improved cross protocol QC comparisons
@@ -10,6 +10,8 @@ All notable changes to this project will be documented in this file.
 ### Changed
  - Update peak coverage table calculation to handle compressed files
  - Keep the non-normalized peak coverage table for some downstream analyses
+ - Enable the peak counts table to adjust the minimum number of samples a peak must be present in to be kept (`--cutoff`)
+ - Enable the peak count table to use raw read counts (default), weight the read count by the percentage overlap of the read in a peak (`--poverlap`), use the normalized read count (`--normalized`), or weight the normalized read count by the percentage overlap (`--poverlap --normalized`)
 
 ## [0.9.7] -- 2020-10-16
 

diff --git a/docs/usage.md b/docs/usage.md
@@ -22,7 +22,7 @@ usage: pepatac.py [-h] [-R] [-N] [-D] [-F] [-T] [--silent] [--verbosity V]
                   [--motif] [--sob] [--no-scale] [--prioritize] [--keep]
                   [--noFIFO] [--lite] [--skipqc] [-V]
 
-PEPATAC version 0.9.7
+PEPATAC version 0.9.8
 
 optional arguments:
   -h, --help            show this help message and exit

diff --git a/usage.txt b/usage.txt
@@ -14,7 +14,7 @@ usage: pepatac.py [-h] [-R] [-N] [-D] [-F] [-T] [--silent] [--verbosity V]
                   [--motif] [--sob] [--no-scale] [--prioritize] [--keep]
                   [--noFIFO] [--lite] [--skipqc] [-V]
 
-PEPATAC version 0.9.7
+PEPATAC version 0.9.8
 
 optional arguments:
   -h, --help            show this help message and exit