Update cran setup #39
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| on: | |
| push: | |
| branches: | |
| - cran | |
| name: cran_setup | |
| jobs: | |
| cran_setup: | |
| runs-on: macOS-latest | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: r-lib/actions/setup-r@v2 | |
| with: | |
| r-version: "release" | |
| extra-repositories: "https://inla.r-inla-download.org/R/testing" | |
| - uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Query dependencies | |
| run: | | |
| install.packages('remotes') | |
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | |
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
| shell: Rscript {0} | |
| - name: Install system dependencies | |
| run: | | |
| brew install --cask xquartz | |
| brew install pkg-config | |
| brew install proj@9 | |
| brew install gdal | |
| brew install eigen | |
| - uses: r-lib/actions/setup-r-dependencies@v2 | |
| with: | |
| dependencies: '"all"' | |
| extra-packages: | | |
| pkgdown | |
| rmarkdown | |
| devtools | |
| - name: Session info | |
| run: | | |
| options(width = 100) | |
| pkgs <- installed.packages()[, "Package"] | |
| sessioninfo::session_info(pkgs, include_base = TRUE) | |
| shell: Rscript {0} | |
| - name: Install package | |
| run: R CMD INSTALL . | |
| - name: Delete vignettes and pkgdown, then copy cran vign | |
| run: | | |
| git config --local user.email "[email protected]" | |
| git config --local user.name "GitHub Actions" | |
| git rm -rf vignettes | |
| rm -rf vignettes | |
| mkdir vignettes | |
| cd cran_vignettes | |
| cp * ../vignettes | |
| cd .. | |
| git rm -rf cran_vignettes | |
| git add vignettes | |
| sed -i .bak 's/#devel\.tag/#stable\.tag/' R/inla_rspde.R | |
| sed -i .bak '/donttest{ #devel version$/a\ | |
| #'\'' tryCatch({ | |
| ' R/inla_rspde.R | |
| sed -i .bak 's/donttest{ #devel version/donttest{ #tryCatch version/' R/inla_rspde.R | |
| sed -i .bak '/#stable\.tag$/a\ | |
| #'\'' }, error = function(e){print("Could not run the example")}) | |
| ' R/inla_rspde.R | |
| sed -i .bak 's/#stable\.tag/#stable\.tryCatch/' R/inla_rspde.R | |
| sed -i .bak 's/#devel\.tag/#stable\.tag/' R/inlabru_rspde.R | |
| sed -i .bak '/donttest{ #devel version$/a\ | |
| #'\'' tryCatch({ | |
| ' R/inlabru_rspde.R | |
| sed -i .bak 's/donttest{ #devel version/donttest{ #tryCatch version/' R/inlabru_rspde.R | |
| sed -i .bak '/#stable\.tag$/a\ | |
| #'\'' }, error = function(e){print("Could not run the example")}) | |
| ' R/inlabru_rspde.R | |
| sed -i .bak 's/#stable\.tag/#stable\.tryCatch/' R/inlabru_rspde.R | |
| Rscript -e "devtools::document()" | |
| git add man | |
| git add .Rbuildignore | |
| git add DESCRIPTION | |
| git add R/inla_rspde.R | |
| git add R/inlabru_rspde.R | |
| git commit -m "Doing the setup" | |
| git push | |
| shell: bash |