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Add github actions.
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ddiez committed Apr 17, 2020
1 parent 50729e1 commit 98febdd
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1 change: 1 addition & 0 deletions .Rbuildignore
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^LICENSE\.md$
^.*\.Rproj$
^\.Rproj\.user$
^\.github$
1 change: 1 addition & 0 deletions .github/.gitignore
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*.html
83 changes: 83 additions & 0 deletions .github/workflows/R-CMD-check.yaml
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on:
push:
branches:
- master
pull_request:
branches:
- master

name: R-CMD-check

jobs:
R-CMD-check:
runs-on: ${{ matrix.config.os }}

name: ${{ matrix.config.os }} (${{ matrix.config.r }})

strategy:
fail-fast: false
matrix:
config:
- {os: windows-latest, r: '3.6'}
- {os: macOS-latest, r: '3.6'}
- {os: macOS-latest, r: 'devel'}
- {os: ubuntu-16.04, r: '3.2', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.3', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.4', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.5', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}
- {os: ubuntu-16.04, r: '3.6', rspm: "https://demo.rstudiopm.com/all/__linux__/xenial/latest"}

env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}

steps:
- uses: actions/checkout@v2

- uses: r-lib/actions/setup-r@master
with:
r-version: ${{ matrix.config.r }}

- uses: r-lib/actions/setup-pandoc@master

- name: Query dependencies
run: |
install.packages('remotes')
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
shell: Rscript {0}

- name: Cache R packages
if: runner.os != 'Windows'
uses: actions/cache@v1
with:
path: ${{ env.R_LIBS_USER }}
key: ${{ runner.os }}-r-${{ matrix.config.r }}-${{ hashFiles('.github/depends.Rds') }}
restore-keys: ${{ runner.os }}-r-${{ matrix.config.r }}-

- name: Install system dependencies
if: runner.os == 'Linux'
env:
RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
run: |
Rscript -e "remotes::install_github('r-hub/sysreqs')"
sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
sudo -s eval "$sysreqs"
- name: Install dependencies
run: |
remotes::install_deps(dependencies = TRUE)
remotes::install_cran("rcmdcheck")
shell: Rscript {0}

- name: Check
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
run: rcmdcheck::rcmdcheck(args = c("--no-manual", "--as-cran"), error_on = "warning", check_dir = "check")
shell: Rscript {0}

- name: Upload check results
if: failure()
uses: actions/upload-artifact@master
with:
name: ${{ runner.os }}-r${{ matrix.config.r }}-results
path: check
6 changes: 6 additions & 0 deletions README.Rmd
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out.width = "100%"
)
```

# scmisc

<!-- badges: start -->
[![R build status](https://github.com/ddiez/scmisc/workflows/R-CMD-check/badge.svg)](https://github.com/ddiez/scmisc/actions)
<!-- badges: end -->


The goal of scmisc is to provide a common interface for several single cell packages.

## Installation
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6 changes: 6 additions & 0 deletions README.md
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# scmisc

<!-- badges: start -->

[![R build
status](https://github.com/ddiez/scmisc/workflows/R-CMD-check/badge.svg)](https://github.com/ddiez/scmisc/actions)
<!-- badges: end -->

The goal of scmisc is to provide a common interface for several single
cell packages.

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