Merge pull request #300 from fidelram/nfs_empty_file_fix

NFS empty file fix
deeptools · Feb 23, 2016 · 10814af · 10814af
2 parents 6b76810 + 5b3fdb0
commit 10814af
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Showing 4 changed files with 6 additions and 0 deletions.
diff --git a/deeptools/plotCoverage.py b/deeptools/plotCoverage.py
@@ -221,6 +221,7 @@ def main(args=None):
     axs[1].set_ylabel('fraction of bases sampled >= coverage')
     axs[1].legend(fancybox=True, framealpha=0.5)
     plt.savefig(args.plotFile.name, format=args.plotFileFormat)
+    plt.close()
 
 if __name__ == "__main__":
     main()
diff --git a/deeptools/plotFingerprint.py b/deeptools/plotFingerprint.py
@@ -181,6 +181,7 @@ def main(args=None):
         args.plotFileFormat = None
 
     plt.savefig(args.plotFile.name, bbox_inches=0, format=args.plotFileFormat)
+    plt.close()
 
     if args.outRawCounts:
         args.outRawCounts.write("'" + "'\t'".join(args.labels) + "'\n")

diff --git a/deeptools/plotHeatmap.py b/deeptools/plotHeatmap.py
@@ -416,6 +416,7 @@ def plotMatrix(hm, outFileName,
 
     plt.savefig(outFileName, bbox_inches='tight', pdd_inches=0, dpi=200,
                 format=image_format)
+    plt.close()
 
 
 def mergeSmallGroups(matrixDict):

diff --git a/deeptools/plotProfile.py b/deeptools/plotProfile.py
@@ -260,6 +260,7 @@ def plot_hexbin(self):
         plt.subplots_adjust(wspace=0.05, hspace=0.3)
         plt.tight_layout()
         plt.savefig(self.out_file_name, dpi=200, format=self.image_format)
+        plt.close()
 
     def plot_heatmap(self):
         matrix_flatten = None
@@ -350,6 +351,7 @@ def plot_heatmap(self):
         plt.subplots_adjust(wspace=0.05, hspace=0.3)
         plt.tight_layout()
         plt.savefig(self.out_file_name, dpi=200, format=self.image_format)
+        plt.close()
 
     def plot_profile(self):
 
@@ -464,6 +466,7 @@ def plot_profile(self):
         plt.subplots_adjust(wspace=0.05, hspace=0.3)
         plt.tight_layout()
         plt.savefig(self.out_file_name, dpi=200, format=self.image_format)
+        plt.close()
 
 
 def main(args=None):