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Add more (optional) output data as requested
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bgruening committed Feb 19, 2016
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11 changes: 11 additions & 0 deletions galaxy/wrapper/plotProfiler.xml
Original file line number Diff line number Diff line change
Expand Up @@ -60,6 +60,10 @@
--yMax $advancedOpt.yMax
#end if
#if $advancedOpt.outFileNameData:
--outFileNameData $outFileNameData

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@dpryan79

dpryan79 Feb 19, 2016

Collaborator

I'll do the same thing for plotHeatmap, since this option will work there again once #294 is merged into develop. We'll then have this for plotPCA, plotProfile and plotHeatmap both at the command line and in Galaxy.

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@bgruening

bgruening Feb 19, 2016

Author Member

Mh, this one is closed? Do you need any help with this?
I'm wondering when I should update the TS and the FR installation. Do we need the 2.1.2 (?) release with this for next week? Should I update to 2.1.1? With this or without ...? :)

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@dpryan79

dpryan79 Feb 19, 2016

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I just retargeted that to develop (#297).

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@dpryan79

dpryan79 Feb 19, 2016

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Regarding updating, I wouldn't worry about it unless someone really wants to use --hclust. The wrappers can get updated whenever you feel like it, though I wouldn't bother doing it before 2.2.0 unless someone is asking you for this.

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@bgruening

bgruening Feb 19, 2016

Author Member

Ok, nice! I will do this then after next weeks workshop!

#end if
@KMEANS_CLUSTERING@
#end if
Expand Down Expand Up @@ -154,6 +158,8 @@
label="Make one plot per group of regions"
help="The default is to make one plot per bigWig file, i.e., all samples next to each other. Choosing this option will make one plot per group of regions. " />

<param argument="--outFileNameData" type="boolean" label="Save the data underlying the average profile"
help="This option will create an additional output file." />

<param argument="--yMin" type="float" value="" size="3" optional="true"
label="Minimum value for the Y-axis of the summary plot. Leave empty for automatic values"/>
Expand All @@ -168,6 +174,11 @@
<outputs>
<expand macro="output_image_file_format" />
<expand macro="output_graphic_outputs" />

<data format="tabular" name="outFileNameData" label="${tool.name} on ${on_string}: Underlying data">
<filter>outFileNameData is True</filter>
</data>

</outputs>
<tests>
<test>
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