more podman notes

desihub · Dec 17, 2024 · 5045c71 · 5045c71
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commit 5045c71
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diff --git a/docker/Containerfile-test b/docker/Containerfile-test
@@ -1,9 +1,3 @@
-# podman-hpc login docker.io
-# podman-hpc build --tag desihub/fastspecfit-test --file ./Containerfile-test .
-# podman-hpc migrate desihub/fastspecfit-test
-# podman-hpc run --rm -it desihub/fastspecfit-test /bin/bash
-# srun --ntasks=2 podman-hpc run --rm --mpi -it desihub/fastspecfit-test /usr/local/bin/test-mpi-fastspecfit --mp=4
-
 FROM desihub/fastspecfit-base:1.0
 
 WORKDIR /src
@@ -14,7 +8,7 @@ RUN for x in \
     wheel \
     setuptools \
     pytest \
-    # numpy \
+    numpy \
     numba \
     ipython \
     ipykernel \

diff --git a/docker/README.md b/docker/README.md
@@ -18,17 +18,24 @@ podman-hpc push desihub/fastspecfit-base:1.0
 
 Check the versions:
 ```
-podman-hpc run --rm -it desihub/fastspecfit-base:1.0 mpirun --version
-podman-hpc run --rm -it desihub/fastspecfit-base:1.0 python -m mpi4py --version
-podman-hpc run --rm -it desihub/fastspecfit-base:1.0 python -m mpi4py --mpi-std-version
-podman-hpc run --rm -it desihub/fastspecfit-base:1.0 python -m mpi4py --mpi-lib-version
+podman-hpc run --rm desihub/fastspecfit-base:1.0 mpirun --version
+podman-hpc run --rm desihub/fastspecfit-base:1.0 python -m mpi4py --version
+podman-hpc run --rm desihub/fastspecfit-base:1.0 python -m mpi4py --mpi-std-version
+podman-hpc run --rm desihub/fastspecfit-base:1.0 python -m mpi4py --mpi-lib-version
 ```
 
 ```
-srun --ntasks=4 podman-hpc run --rm -it --mpi desihub/fastspecfit-base:1.0 python -m mpi4py.bench helloworld
+srun --ntasks=4 podman-hpc run --rm --mpi desihub/fastspecfit-base:1.0 python -m mpi4py.bench helloworld
 ```
 
 
+### Test scripts:
+podman-hpc login docker.io
+podman-hpc build --tag desihub/fastspecfit-test --file ./Containerfile-test .
+podman-hpc migrate desihub/fastspecfit-test
+srun --ntasks=2 podman-hpc run --rm --mpi desihub/fastspecfit-test /usr/local/bin/test-mpi-fastspecfit --mp=4
+
+
 ###
 
 First, build the container:
@@ -38,9 +45,9 @@ podman-hpc migrate desihub/fastspecfit:3.1.1
 podman-hpc push desihub/fastspecfit:3.1.1
 ```
 
-podman-hpc run --userns keep-id --rm --volume=/dvs_ro/cfs/cdirs:/dvs_ro/cfs/cdirs --volume=/pscratch/sd/i/ioannis:/scratch -it fastspecfit:3.1.1 /bin/bash
+podman-hpc run --userns keep-id --rm --volume=/dvs_ro/cfs/cdirs:/dvs_ro/cfs/cdirs --volume=/pscratch/sd/i/ioannis:/scratch fastspecfit:3.1.1 /bin/bash
 
-podman-hpc run --userns keep-id --group-add keep-groups --rm --volume=/dvs_ro/cfs/cdirs:/dvs_ro/cfs/cdirs --volume=/global/cfs/cdirs:/global/cfs/cdirs --volume=/pscratch/sd/i/ioannis:/scratch --env NUMBA_CACHE_DIR=/scratch/numba_cache -it desihub/fastspecfit:3.1.1 /bin/bash
+podman-hpc run --userns keep-id --group-add keep-groups --rm --volume=/dvs_ro/cfs/cdirs:/dvs_ro/cfs/cdirs --volume=/global/cfs/cdirs:/global/cfs/cdirs --volume=/pscratch/sd/i/ioannis:/scratch --env NUMBA_CACHE_DIR=/scratch/numba_cache desihub/fastspecfit:3.1.1 /bin/bash
 
 List the available images:
 ```
@@ -56,7 +63,7 @@ podman-hpc pull desihub/fastspecfit:3.1.1
 
 Enter the container:
 ```
-podman-hpc run --rm -it fastspecfit:3.1.1 /bin/bash
+podman-hpc run --rm fastspecfit:3.1.1 /bin/bash
 ```
 
 To delete a container: