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DiamondLightSource-build-server committed Aug 4, 2024
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2 changes: 1 addition & 1 deletion documentation/programs/dials_cosym.html
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Expand Up @@ -281,7 +281,7 @@ <h2>Example<a class="headerlink" href="#example" title="Link to this heading">¶
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-default notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1152-g7cf56ea6c
The following parameters have been modified:

input {
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40 changes: 20 additions & 20 deletions documentation/tutorials/mpro_x0692.html
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Expand Up @@ -79,7 +79,7 @@ <h3>Import<a class="headerlink" href="#import" title="Link to this heading">¶</
</div>
<p>The output just describes what the software understands of the images it was
passed, in this case one sequence of data containing 400 images:</p>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span>DIALS 3.dev.1152-g7cf56ea6c
The following parameters have been modified:

input {
Expand Down Expand Up @@ -128,7 +128,7 @@ <h3>Find Spots<a class="headerlink" href="#find-spots" title="Link to this headi
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>spotfinder {
Expand Down Expand Up @@ -637,7 +637,7 @@ <h3>Indexing<a class="headerlink" href="#indexing" title="Link to this heading">
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>input {
Expand Down Expand Up @@ -1366,7 +1366,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>refinement {
Expand Down Expand Up @@ -1475,7 +1475,7 @@ <h3>Bravais Lattice Refinement<a class="headerlink" href="#bravais-lattice-refin
<div class="header docutils container">
<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>refinement {
Expand Down Expand Up @@ -1600,7 +1600,7 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
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<p><strong>Show/Hide Log</strong></p>
</div>
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>integration {
<span class="linenos"> 4</span> mp {
Expand Down Expand Up @@ -2150,12 +2150,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos"> 548</span>
<span class="linenos"> 549</span>Timing information for reference profile formation
<span class="linenos"> 550</span>+-------------------+---------------+
<span class="linenos"> 551</span>| Read time | 14.43 seconds |
<span class="linenos"> 552</span>| Extract time | 0.44 seconds |
<span class="linenos"> 551</span>| Read time | 14.48 seconds |
<span class="linenos"> 552</span>| Extract time | 0.36 seconds |
<span class="linenos"> 553</span>| Pre-process time | 0.02 seconds |
<span class="linenos"> 554</span>| Process time | 8.51 seconds |
<span class="linenos"> 554</span>| Process time | 8.38 seconds |
<span class="linenos"> 555</span>| Post-process time | 0.00 seconds |
<span class="linenos"> 556</span>| Total time | 23.27 seconds |
<span class="linenos"> 556</span>| Total time | 23.32 seconds |
<span class="linenos"> 557</span>+-------------------+---------------+
<span class="linenos"> 558</span>
<span class="linenos"> 559</span>================================================================================
Expand Down Expand Up @@ -2686,12 +2686,12 @@ <h3>Integration<a class="headerlink" href="#integration" title="Link to this hea
<span class="linenos">1084</span>
<span class="linenos">1085</span>Timing information for integration
<span class="linenos">1086</span>+-------------------+----------------+
<span class="linenos">1087</span>| Read time | 16.04 seconds |
<span class="linenos">1087</span>| Read time | 18.24 seconds |
<span class="linenos">1088</span>| Extract time | 6.14 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.25 seconds |
<span class="linenos">1090</span>| Process time | 125.63 seconds |
<span class="linenos">1089</span>| Pre-process time | 0.26 seconds |
<span class="linenos">1090</span>| Process time | 126.07 seconds |
<span class="linenos">1091</span>| Post-process time | 0.00 seconds |
<span class="linenos">1092</span>| Total time | 148.82 seconds |
<span class="linenos">1092</span>| Total time | 151.37 seconds |
<span class="linenos">1093</span>+-------------------+----------------+
<span class="linenos">1094</span>
<span class="linenos">1095</span>Removing 22837 unintegrated reflections of 199395 total
Expand Down Expand Up @@ -2743,7 +2743,7 @@ <h3>Symmetry analysis<a class="headerlink" href="#symmetry-analysis" title="Link
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<p><strong>Show/Hide Log</strong></p>
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<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>
<span class="linenos"> 4</span>best_monoclinic_beta = False
Expand Down Expand Up @@ -2915,7 +2915,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
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<p><strong>Show/Hide Log</strong></p>
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<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1149-gb3ed4609c
<div class="highlight-none notranslate"><div class="highlight"><pre><span></span><span class="linenos"> 1</span>DIALS 3.dev.1152-g7cf56ea6c
<span class="linenos"> 2</span>The following parameters have been modified:
<span class="linenos"> 3</span>input {
<span class="linenos"> 4</span> experiments = symmetrized.expt
Expand Down Expand Up @@ -2984,7 +2984,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos"> 67</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos"> 68</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos"> 69</span>
<span class="linenos"> 70</span>Time taken for refinement 6.89
<span class="linenos"> 70</span>Time taken for refinement 6.88
<span class="linenos"> 71</span>
<span class="linenos"> 72</span>Refinement steps:
<span class="linenos"> 73</span>+--------+--------+----------+
Expand Down Expand Up @@ -3063,7 +3063,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">146</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">147</span>Performing a round of scaling with an LBFGS minimizer.
<span class="linenos">148</span>
<span class="linenos">149</span>Time taken for refinement 3.01
<span class="linenos">149</span>Time taken for refinement 3.03
<span class="linenos">150</span>
<span class="linenos">151</span>Refinement steps:
<span class="linenos">152</span>+--------+--------+----------+
Expand Down Expand Up @@ -3126,7 +3126,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">209</span>Components to be refined in this cycle for all datasets: scale, decay, absorption
<span class="linenos">210</span>Performing a round of scaling with a Levenberg-Marquardt minimizer.
<span class="linenos">211</span>
<span class="linenos">212</span>Time taken for refinement 4.18
<span class="linenos">212</span>Time taken for refinement 4.21
<span class="linenos">213</span>
<span class="linenos">214</span>Refinement steps:
<span class="linenos">215</span>+--------+--------+----------+
Expand Down Expand Up @@ -3200,7 +3200,7 @@ <h3>Scaling and Merging<a class="headerlink" href="#scaling-and-merging" title="
<span class="linenos">283</span>The reflection table variances have been adjusted to account for the
<span class="linenos">284</span>uncertainty in the scaling model
<span class="linenos">285</span>
<span class="linenos">286</span>Total time taken: 20.4377s
<span class="linenos">286</span>Total time taken: 20.5199s
<span class="linenos">287</span>
<span class="linenos">288</span>================================================================================
<span class="linenos">289</span>
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