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merge suite #864

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merged 2 commits into from
Jan 18, 2024
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merge suite #864

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b2a0733
update docker links
josschavezf Jan 17, 2024
6172d5b
Merge pull request #863 from josschavezf/suite
josschavezf Jan 17, 2024
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10 changes: 5 additions & 5 deletions vignettes/docker.Rmd
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Expand Up @@ -9,14 +9,14 @@ vignette: >

# 1. Docker Image with RStudio

We have set up a [Docker Image](https://hub.docker.com/r/giottopackage/rstudio_suite_modular) linked to RStudio with Giotto pre-installed.
We have set up a [Docker Image](https://hub.docker.com/r/giottopackage/rstudio_suite) linked to RStudio with Giotto pre-installed.

## Instructions

Follow these instructions to create your own Docker container and run
Giotto:

1. docker pull `giottopackage/rstudio_suite_modular:latest`
1. docker pull `giottopackage/rstudio_suite:latest`
2. docker run
`--rm -p 8787:8787 -e PASSWORD=mypassword giottopackage/rstudio_suite:latest`
1. You may use *any* port as long as it is not in use.
Expand All @@ -36,15 +36,15 @@ Giotto:

# 2. Docker Image with bash terminal

If you prefer to run your analysis directly on the terminal, we have set up a [Docker Image](https://hub.docker.com/r/giottopackage/suite_modular) able to run in a bash environment.
If you prefer to run your analysis directly on the terminal, we have set up a [Docker Image](https://hub.docker.com/r/giottopackage/suite) able to run in a bash environment.

## Instructions

Follow these instructions to create your own Docker container and run
Giotto:

1. docker pull `giottopackage/suite_modular:latest`
2. docker run `-ti giottopackage/suite_modular:latest /bin/bash`
1. docker pull `giottopackage/suite:latest`
2. docker run `-ti giottopackage/suite:latest /bin/bash`
3. R
4. Run the following **in R**:
1. library(Giotto)
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