Merge branch 'main' into website #52
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| # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples | |
| # Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help | |
| name: pkgdown | |
| on: | |
| push: | |
| branches: [website] | |
| pull_request: | |
| branches: [website] | |
| release: | |
| types: [published] | |
| workflow_dispatch: | |
| jobs: | |
| pkgdown: | |
| runs-on: ubuntu-latest | |
| # Only restrict concurrency for non-PR jobs | |
| concurrency: | |
| group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }} | |
| env: | |
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
| permissions: | |
| contents: write | |
| steps: | |
| - name: Checkout repo for workflow access | |
| uses: actions/checkout@v3 | |
| - name: Setup pandoc | |
| uses: r-lib/actions/setup-pandoc@v2 | |
| - name: Setup R environment | |
| uses: r-lib/actions/setup-r@v2 | |
| with: | |
| use-public-rspm: true | |
| - name: Set up dependencies | |
| uses: r-lib/actions/setup-r-dependencies@v2 | |
| env: | |
| _R_CHECK_FORCE_SUGGESTS: false | |
| _R_CHECK_RD_XREFS: false | |
| with: | |
| dependencies: '"hard"' # do not use suggested dependencies | |
| extra-packages: any::pkgdown, local::. | |
| needs: website | |
| - name: Set up dependencies (GiottoData) | |
| run: | | |
| new_github_ver_avail <- function( | |
| url, current_ver = NULL | |
| ) { | |
| # Return NULL if any warnings or errors due to inaccessible | |
| descfile <- tryCatch( | |
| expr = readLines(url), | |
| warning = function(w) NULL, | |
| error = function(e) NULL | |
| ) | |
| # silently return NULL if not found | |
| if (is.null(descfile)) return(invisible()) | |
| # parse github version number | |
| gh_ver <- descfile[grep(pattern = "Version:", descfile)] | |
| gh_ver <- gsub(pattern = "Version: ", replacement = "", gh_ver) | |
| # see if GH version is newer | |
| ver_compare <- utils::compareVersion(gh_ver, as.character(current_ver)) | |
| # silently return NULL if not newer | |
| if (ver_compare != 1) return(invisible()) | |
| # return newer version number | |
| return(gh_ver) | |
| } | |
| new_gdata <- new_github_ver_avail( | |
| url = "https://raw.githubusercontent.com/drieslab/GiottoData/master/DESCRIPTION", | |
| current_ver = packageVersion("GiottoData") | |
| ) | |
| suppressWarnings({ | |
| if (!is.null(new_gdata)) | |
| remotes::install_github('drieslab/GiottoData', build = FALSE) | |
| }) | |
| shell: Rscript {0} | |
| - name: Build site | |
| run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE) | |
| shell: Rscript {0} | |
| - name: Deploy to GitHub pages 🚀 | |
| if: github.event_name != 'pull_request' | |
| uses: JamesIves/[email protected] | |
| with: | |
| clean: false | |
| branch: gh-pages | |
| folder: docs |