tempora fix

R/convenience_visiumHD.R

@@ -119,9 +119,10 @@ setMethod("print", signature("VisiumHDReader"), function(x, ...) show(x))
 #' @returns VisiumHDReader object
 #' @examples
 #' # Create a `VisiumHDReader` object
-#' reader <- importVisiumHD()
+#' 
 #'
 #' \dontrun{
+#' reader <- importVisiumHD()
 #' # Set the visiumHD_dir
 #' reader$visiumHD_dir <- "path to visium HD dir"
 #' readerHD$visiumHD_dir <- visiumHD_dir
@@ -130,12 +131,12 @@ setMethod("print", signature("VisiumHDReader"), function(x, ...) show(x))
 #' tissue_pos <- readerHD$load_tissue_position()
 #' metadata <- readerHD$load_metadata()
 #'
-#' Load matrix or create expression object
+#' # Load matrix or create expression object
 #' matrix <- readerHD$load_matrix()
 #' expression_obj <- readerHD$load_expression()
 #'
-#' Load transcript data (cell metadata, expression object, and transcripts per 
-#' pixel)
+#' # Load transcript data (cell metadata, expression object, and transcripts per 
+#' # pixel)
 #' my_transcripts <- readerHD$load_transcripts(array_subset_row = c(500, 1000),
 #'                                             array_subset_col = c(500, 1000))
 #'