chore: fix build

_pkgdown.yml

@@ -1001,7 +1001,8 @@ reference:
 - contents:
   - doCellSegmentation
   - doCellposeSegmentation
-  - calculateAffineMatrixFromLandmarks
+  - doMesmerSegmentation
+  - doStardistSegmentation
 - title: Doublet Detection
   desc: Function to detect doublets in raw expression data.
 - contents:
@@ -1019,6 +1020,7 @@ reference:
   - compareCellAbundance
   - exportGiottoViewer
   - interactiveLandmarkSelection
+  - calculateAffineMatrixFromLandmarks
 - title: Interoperability
   desc: Convert other type of objects into a Giotto object and vice versa.
 - contents:

vignettes/deconvolution.Rmd

@@ -106,8 +106,9 @@ sign_matrix <- makeSignMatrixDWLSfromMatrix(
 This step may take a couple of minutes to run.
 
 ```{r, eval=FALSE}
-g <- runDWLSDeconv(gobject = g, 
-                   sign_matrix = sign_matrix)
+g <- runDWLSDeconv(g,
+    sign_matrix = sign_matrix
+)
 ```
 
 # Visualize
@@ -116,8 +117,9 @@ Plot the DWLS deconvolution result creating with pie plots showing the proportio
 
 ```{r, eval=FALSE}
 spatDeconvPlot(g, 
-               show_image = FALSE,
-               radius = 50)
+    show_image = FALSE,
+    radius = 50
+)
 ```
 
 ```{r, echo=FALSE, out.width="80%", fig.align='center'}