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fix links again
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- this time point some at GiottoClass since they are re-exported
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jiajic committed Nov 12, 2024
1 parent e186812 commit b3f1e7b
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1 change: 1 addition & 0 deletions _pkgdown.yml
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Expand Up @@ -21,6 +21,7 @@ template:
gtag('config', 'G-2V1K0KPLJC');
</script>
<link href="extra.css" type="text/css" rel="stylesheet">
bootstrap: 3
bslib:
bg: "#FFFFFF"
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8 changes: 4 additions & 4 deletions vignettes/object_creation.Rmd
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---
title: "Giotto Object Creation"
css: "../assets/custom.css"
css: "../pkgdown/extra.css"
output:
html_document:
number_sections: false
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By providing values to other `createGiottoObject()` or `createGiottoObjectSubcellular()` parameters, it is possible to add:

- **Cell** or **feature (gene) metadata**: see
[addCellMetadata](../reference/addCellMetadata.html) and
[addFeatMetadata](../reference/addFeatMetadata.html)
[addCellMetadata](https://drieslab.github.io/GiottoClass/reference/addCellMetadata.html) and
[addFeatMetadata](https://drieslab.github.io/GiottoClass/reference/addFeatMetadata.html)
- **Spatial networks** or **grids**: see [Visualizations](./visualizations.html)
- **Dimension reduction**: see [Clustering](./dimension_reduction.html)
- **Images**: see [createGiottoLargeImage](../reference/createGiottoLargeImage.html)
- **Images**: see [createGiottoLargeImage](https://drieslab.github.io/GiottoClass/reference/createGiottoLargeImage.html)
- **giottoInstructions**: see [Create and change Giotto instructions](instructions.html)

For a more in-depth look at the `giotto` object structure, take a look at the [introduction to giotto classes](structure.html)
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