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Update gitignore to add config JSONs to repo
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
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@@ -7,4 +7,6 @@ | |
| *.txt | ||
| .env | ||
| venv/ | ||
| __pycache__/ | ||
| __pycache__/ | ||
| !CEN_config.json | ||
| !TWE_config.json | ||
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| { | ||
| "assay": "CEN", | ||
| "search_term": "*CEN38", | ||
| "number_of_projects": null, | ||
| "filename": "Multiqc_somalier.samples.tsv", | ||
| "column_to_compare": "Predicted_Sex", | ||
| "sample_column": "sample_id", | ||
| "variables_to_plot": [ | ||
| [ | ||
| "X_n", "X_het", "X_hom_ref", "X_hom_alt", "X_depth_mean" | ||
| ], | ||
| [ | ||
| "Y_n", "Y_depth_mean" | ||
| ], | ||
| [ | ||
| "n_het", "n_hom_ref", "n_unknown", "n_hom_alt" | ||
| ], | ||
| [ | ||
| "depth_mean", "depth_sd", "gt_depth_mean", "gt_depth_sd", | ||
| "ab_mean", "ab_std", "p_middling_ab" | ||
| ] | ||
| ] | ||
| } |
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,23 @@ | ||
| { | ||
| "assay": "TWE", | ||
| "search_term": "*TWE38", | ||
| "number_of_projects": null, | ||
| "filename": "Multiqc_somalier.samples.tsv", | ||
| "column_to_compare": "Predicted_Sex", | ||
| "sample_column": "sample_id", | ||
| "variables_to_plot": [ | ||
| [ | ||
| "X_n", "X_het", "X_hom_ref", "X_hom_alt", "X_depth_mean" | ||
| ], | ||
| [ | ||
| "Y_n", "Y_depth_mean" | ||
| ], | ||
| [ | ||
| "n_het", "n_hom_ref", "n_unknown", "n_hom_alt" | ||
| ], | ||
| [ | ||
| "depth_mean", "depth_sd", "gt_depth_mean", "gt_depth_sd", | ||
| "ab_mean", "ab_std", "p_middling_ab" | ||
| ] | ||
| ] | ||
| } |