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Merge pull request #8 from eastgenomics/v1.0.3
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version change, NA pattern change, reports workflow v1.1.0
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mattgarner authored May 27, 2021
2 parents 81822c4 + 549ea58 commit 7d0fbb5
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions egg4_config.py
Original file line number Diff line number Diff line change
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)

assay_name = "TWE" # Twist Whole Exome
assay_version = "v1.0.0"
assay_version = "v1.0.3"

ref_project_id = "project-Fkb6Gkj433GVVvj73J7x8KbV"

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},
"{}.query_vcf".format(happy_stage_id): {
"app": "sentieon-dnaseq", "subdir": "",
"pattern": "NA12878.*_markdup_recalibrated_Haplotyper.vcf.gz$",
"pattern": "^NA12878-.*-EGG4_markdup_recalibrated_Haplotyper.vcf.gz$",
},
}

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generate_bed_stage_id = "stage-Fyq5yy0433GXxz691bKyvjPJ"
athena_stage_id = "stage-Fyq5z18433GfYZbp3vX1KqjB"

rpt_workflow_id = "{}:workflow-G1QxZx8433GY1Pzx92ZKp3ZK".format(ref_project_id)
rpt_workflow_id = "{}:workflow-G2fQ9pj433GvzfqGB1KKPjY0".format(ref_project_id)

rpt_stage_input_dict = {
# vcf2xls
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