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Releases: eastgenomics/egg4_dias_TWE_config

v3.2.2

24 Dec 11:19
@Arun-bioinformatics Arun-bioinformatics
v3.2.2
fd536b8
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v3.2.2 Latest
Latest

Updated to use latest twe_vep_config_v1.2.23.json

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v3.2.1

05 Dec 10:23
@Arun-bioinformatics Arun-bioinformatics
v3.2.1
f1622fb
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v3.2.1

Updated to use latest twe_vep_config_v1.2.22.json

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v3.2.0

05 Nov 08:12
@rklocke rklocke
v3.2.0
13ece6c
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v3.2.0
  • Updated to use new genepanels 241024_genepanels.tsv
  • Updated to use new PanelApp JSON 241030_panelapp_dump.json
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v3.1.9

28 Oct 08:20
@cnascim1 cnascim1
v3.1.9
a8af01b
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v3.1.9

Updated to use latest twe_vep_config_v1.2.21.json

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v3.1.8

26 Sep 08:39
@Arun-bioinformatics Arun-bioinformatics
v3.1.8
05726c7
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v3.1.8

Updated to use TWE VEP config v1.1.20
Testing info can be found here: https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3398959140/dias_TWE_config_GRCh37_v3.1.8.json

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v3.1.7

23 Aug 14:25
@cnascim1 cnascim1
v3.1.7
e007400
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v3.1.7

Updated to use latest TWE VEP config v1.1.19

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v3.1.6

30 Jul 12:17
@growland2 growland2
v3.1.6
ad6125f
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v3.1.6

Updated to use latest TWE VEP config v1.1.18

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v3.1.5

16 Jul 14:15
@growland2 growland2
v3.1.5
8b08b36
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v3.1.5

Updated to use eggd_artemis v1.5.0

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v3.1.4

03 Jul 11:58
@growland2 growland2
v3.1.4
949c8df
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v3.1.4

Updated to use latest versions of:

  • SNV reports workflow v2.2.2 (and updated configuration for eggd_athena to start outputting summary text file)
  • TWE VEP config v1.1.17
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v3.1.3

12 Jun 08:25
@growland2 growland2
v3.1.3
d2592e0
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v3.1.3

Changes:

  • Fix for the eggd_optimised_filtering filter string to:
    • allow the filter to include variants with a CLNSIG value containing “Pathogenic” (case-sensitive) or “Likely_pathogenic” (case-insensitive)
    • use the correct syntax for case-insensitive pattern matching
  • update to use the latest TWE VEP config twe_vep_config_v1.1.16.json

Testing page:
https://cuhbioinformatics.atlassian.net/wiki/spaces/DV/pages/3251011625/dias+TWE+config+GRCh37+v3.1.3.json

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