Reformats the output of somalier relate to append predicted sex, add a matching column to state whether sample's predicted sex is a true or false match to reported sex. The app also reorders columns to present data clearly in MultiQC report.
- somalier.samples.tsv
- Female and male thresholds to predict sex from x_het variant calls
- female = 45, male = 1 are used for default
- Anything between the female and male threshold is classified as unknown sex
- Multiqc_somalier.samples.tsv
If you want to add predicted sex column and present data in MultiQC report.