pr-checks: run hdf5 testsuite #2
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: HDF5 | ||
| on: [pull_request] | ||
| env: | ||
| OMPI_INSTALL_DIR=/opt/openmpi | ||
| jobs: | ||
| hdf5-testsuite: | ||
| runs-on: ubuntu-22.04 | ||
| steps: | ||
| - name: Install dependencies | ||
| run: | | ||
| sudo apt update | ||
| sudo apt install -y --no-install-recommends wget | ||
| - uses: actions/checkout@v4 | ||
| with: | ||
| submodules: recursive | ||
| - name: Build Open MPI | ||
| run: | | ||
| ./autogen.pl | ||
| ./configure --prefix=${OMPI_INSTALL_DIR} --with-pmix=internal --with-prrte=internal --with-hwloc=internal --with-libevent=internal --disable-mpi-fortran --disable-oshmem | ||
| make -j ${nproc} && make install | ||
| - name: Install HDF5 | ||
| run: | | ||
| wget https://github.com/HDFGroup/hdf5/releases/latest/download/hdf5.tar.gz | ||
| tar -xzf hdf5.tar.gz | ||
| mv hdf5-1* hdf5 | ||
| cd hdf5 | ||
| export PATH=${OMPI_INSTALL_DIR}/bin:${PATH} | ||
| export LD_LIBRARY_PATH=${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH} | ||
| ./configure --enable-parallel | ||
| make -j ${nproc} | ||
| - name: Run testsuite (ompio) | ||
| run: | | ||
| export PATH=${OMPI_INSTALL_DIR}/bin:${PATH} | ||
| export LD_LIBRARY_PATH=${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH} | ||
| cd testpar | ||
| HDF5TestExpress=0 mpirun -np 4 ./t_shapesame | ||
| mpirun -np 4 ./t_filters_parallel | ||
| mpirun -np 4 ./testphdf5 | ||
| cd .. | ||
| timeout-minutes: 10 | ||
| - name: Run testsuite (romio) | ||
| run: | | ||
| export PATH=${OMPI_INSTALL_DIR}/bin:${PATH} | ||
| export LD_LIBRARY_PATH=${OMPI_INSTALL_DIR}/lib:${LD_LIBRARY_PATH} | ||
| cd testpar | ||
| HDF5TestExpress=0 mpirun --mca io ^ompio -np 4 ./t_shapesame | ||
| mpirun --mca io ^ompio -np 4 ./t_filters_parallel | ||
| mpirun --mca io ^ompio -np 4 ./testphdf5 | ||
| cd .. | ||
| timeout-minutes: 10 | ||
