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elixir-europe · Jun 5, 2024 · 306feba · 306feba
1 parent 2d3c14c
commit 306feba
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Showing 3 changed files with 2 additions and 7 deletions.
diff --git a/mars-cli/mars_lib/biosamples_external_references.py b/mars-cli/mars_lib/biosamples_external_references.py
@@ -6,7 +6,7 @@
 import os
 from jsonschema import validate
 from jsonschema.exceptions import ValidationError, SchemaError
-from typing import Union, Optional
+from typing import Union
 
 # -- #
 # Hardcoded values

diff --git a/mars-cli/mars_lib/isa_json.py b/mars-cli/mars_lib/isa_json.py
@@ -9,9 +9,6 @@
     MaterialAttributeValue,
     Study,
     OntologyAnnotation,
-    Sample,
-    Source,
-    Material,
 )
 from pydantic import ValidationError
 from mars_lib.target_repo import TARGET_REPO_KEY, TargetRepository
@@ -311,7 +308,7 @@ def fetch_existing_characteristic_category(
         for char_cat in node.characteristicCategories
         if char_cat.characteristicType
         and char_cat.characteristicType.annotationValue
-        and type(char_cat.characteristicType.annotationValue) == str
+        and isinstance(char_cat.characteristicType.annotationValue, str)
         and char_cat.characteristicType.annotationValue.lower() == "accession"
     )
     if not accession_cat:

diff --git a/mars-cli/mars_lib/submit.py b/mars-cli/mars_lib/submit.py
@@ -1,5 +1,4 @@
 from mars_lib.models.isa_json import Investigation
-from mars_lib.models.repository_response import RepositoryResponse
 from mars_lib.authentication import get_webin_auth_token
 from mars_lib.biosamples_external_references import (
     get_header,
@@ -10,7 +9,6 @@
 )
 from mars_lib.isa_json import reduce_isa_json_for_target_repo
 from mars_lib.target_repo import TargetRepository
-from mars_lib.authentication import get_webin_auth_token
 import requests