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Correct datatype for dates
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@laurianvm
laurianvm committed Oct 22, 2024
1 parent 1adc155 commit ea2382e
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Showing 2 changed files with 32 additions and 32 deletions.
32 changes: 16 additions & 16 deletions templates/sediment_sampling.ldt.ttl.j2
View file
Original file line number Diff line number Diff line change
Expand Up @@ -18,7 +18,7 @@ Sets:
{# provenance part #}
dct:type "sampling"^^xsd:string ;
{%- if _.collection_date != "NA" %}
prov:startedAtTime {{_.collection_date | xsd("string") | safe }} ; {#ValueError: ISO string too short with xsd:date#}
prov:startedAtTime {{_.collection_date | xsd("date") | safe }} ; {#ValueError: ISO string too short with xsd:date#}
{%- endif %}
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
Expand All @@ -31,7 +31,7 @@ Sets:
] ;
{# properties #}
{%- if _.collection_date != "NA" %}
sosa:resultTime {{ _.collection_date | xsd("string") | safe }} ; {#xsd:dateTime not supported#}
sosa:resultTime {{ _.collection_date | xsd("date") | safe }} ; {#xsd:dateTime not supported#}
{%- endif %}
{%- if _.samp_collect_device != "NA" %}
sosa:madeBySampler {{ _.samp_collect_device | xsd("string") | safe }} ;
Expand Down Expand Up @@ -349,22 +349,22 @@ Sets:
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Storage of sample at sequencing centre for subsequent DNA sequencing"^^xsd:string ;
prov:startedAtTime {{ _.arr_date_seq | xsd("string") | safe }} ; {#ValueError: ISO string too short with xsd:date#}
prov:startedAtTime {{ _.arr_date_seq | xsd("date") | safe }} ; {#ValueError: ISO string too short with xsd:date#}

prov:wasInformedBy [
{# transport from HMBRC HQ to sequencing centre prov#}
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample from HMBRC HQ to sequencing centre"^^xsd:string ;
prov:startedAtTime {{ _.ship_date_seq | xsd("string") | safe }} ;
prov:endedAtTime {{ _.arr_date_seq | xsd("string") | safe }} ;
prov:startedAtTime {{ _.ship_date_seq | xsd("date") | safe }} ;
prov:endedAtTime {{ _.arr_date_seq | xsd("date") | safe }} ;

prov:wasInformedBy [
{# storage at HMBRC HQ prov#}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Storage of sample at HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ;
prov:startedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ;
{%- if _.store_temp_hq != "NA" %}
emobon-sampling:storageTemp [
a qudt:QuantityValue ;
Expand All @@ -386,15 +386,15 @@ Sets:
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample to HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.ship_date | xsd("string") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ; {#note: column name might still change!#}
prov:startedAtTime {{ _.ship_date | xsd("date") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ; {#note: column name might still change!#}

prov:wasInformedBy [
{#- local storage sample prov #}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;

{%- if _.store_person != "NA" %}
prov:wasAssociatedWith [
Expand Down Expand Up @@ -437,7 +437,7 @@ Sets:
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Storage of sample at HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ;
prov:startedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ;
{%- if _.store_temp_hq != "NA" %}
emobon-sampling:storageTemp [
a qudt:QuantityValue ;
Expand All @@ -459,16 +459,16 @@ Sets:
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample to HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.ship_date | xsd("string") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ; {#note: column name might still change!#}
prov:startedAtTime {{ _.ship_date | xsd("date") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ; {#note: column name might still change!#}

prov:wasInformedBy [
{#- local storage sample prov #}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
{%- if _.samp_store_date != "NA" %}
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;
{%- endif %}
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
Expand Down Expand Up @@ -509,15 +509,15 @@ Sets:
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample to HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.ship_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.ship_date | xsd("date") | safe }} ;

prov:wasInformedBy [
{#- local storage sample prov #}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
{%- if _.samp_store_date != "NA" %}
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;
{%- endif %}
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
Expand Down Expand Up @@ -557,7 +557,7 @@ Sets:
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
{%- if _.store_person != "NA" %}
Expand Down
32 changes: 16 additions & 16 deletions templates/water_sampling.ldt.ttl.j2
View file
Original file line number Diff line number Diff line change
Expand Up @@ -17,7 +17,7 @@ Sets:
{# provenance part #}
dct:type "sampling"^^xsd:string ;
{%- if _.collection_date != "NA" %}
prov:startedAtTime {{_.collection_date | xsd("string") | safe }} ; {#ValueError: ISO string too short with xsd:date#}
prov:startedAtTime {{_.collection_date | xsd("date") | safe }} ; {#ValueError: ISO string too short with xsd:date#}
{%- endif %}
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
Expand All @@ -30,7 +30,7 @@ Sets:
] ;
{# properties #}
{%- if _.collection_date != "NA" %}
sosa:resultTime {{ _.collection_date | xsd("string") | safe }} ; {#xsd:dateTime not supported#}
sosa:resultTime {{ _.collection_date | xsd("date") | safe }} ; {#xsd:dateTime not supported#}
{%- endif %}
{%- if _.samp_collect_device != "NA" %}
sosa:madeBySampler {{ _.samp_collect_device | xsd("string") | safe }} ;
Expand Down Expand Up @@ -368,22 +368,22 @@ Sets:
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Storage of sample at sequencing centre for subsequent DNA sequencing"^^xsd:string ;
prov:startedAtTime {{ _.arr_date_seq | xsd("string") | safe }} ; {#ValueError: ISO string too short with xsd:date#}
prov:startedAtTime {{ _.arr_date_seq | xsd("date") | safe }} ; {#ValueError: ISO string too short with xsd:date#}

prov:wasInformedBy [
{# transport from HMBRC HQ to sequencing centre prov#}
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample from HMBRC HQ to sequencing centre"^^xsd:string ;
prov:startedAtTime {{ _.ship_date_seq | xsd("string") | safe }} ;
prov:endedAtTime {{ _.arr_date_seq | xsd("string") | safe }} ;
prov:startedAtTime {{ _.ship_date_seq | xsd("date") | safe }} ;
prov:endedAtTime {{ _.arr_date_seq | xsd("date") | safe }} ;

prov:wasInformedBy [
{# storage at HMBRC HQ prov#}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Storage of sample at HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ;
prov:startedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ;
{%- if _.store_temp_hq != "NA" %}
emobon-sampling:storageTemp [
a qudt:QuantityValue ;
Expand All @@ -405,15 +405,15 @@ Sets:
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample to HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.ship_date | xsd("string") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ; {#note: column name might still change!#}
prov:startedAtTime {{ _.ship_date | xsd("date") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ; {#note: column name might still change!#}

prov:wasInformedBy [
{#- local storage sample prov #}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;

{%- if _.store_person != "NA" %}
prov:wasAssociatedWith [
Expand Down Expand Up @@ -456,7 +456,7 @@ Sets:
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Storage of sample at HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ;
prov:startedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ;
{%- if _.store_temp_hq != "NA" %}
emobon-sampling:storageTemp [
a qudt:QuantityValue ;
Expand All @@ -478,15 +478,15 @@ Sets:
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample to HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.ship_date | xsd("string") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("string") | safe }} ; {#note: column name might still change!#}
prov:startedAtTime {{ _.ship_date | xsd("date") | safe }} ;
prov:endedAtTime {{ _.arr_date_hq | xsd("date") | safe }} ; {#note: column name might still change!#}

prov:wasInformedBy [
{#- local storage sample prov #}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
{%- if _.store_person != "NA" %}
Expand Down Expand Up @@ -526,15 +526,15 @@ Sets:
a prov:Activity ;
dct:type "transport"^^xsd:string ;
dct:description "Shipping of sample to HMBRC HQ"^^xsd:string ;
prov:startedAtTime {{ _.ship_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.ship_date | xsd("date") | safe }} ;

prov:wasInformedBy [
{#- local storage sample prov #}
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
{%- if _.samp_store_date != "NA" %}
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;
{%- endif %}
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
Expand Down Expand Up @@ -574,7 +574,7 @@ Sets:
a prov:Activity ;
dct:type "storage"^^xsd:string ;
dct:description "Local storage of the collected sample"^^xsd:string ;
prov:startedAtTime {{ _.samp_store_date | xsd("string") | safe }} ;
prov:startedAtTime {{ _.samp_store_date | xsd("date") | safe }} ;
prov:wasAssociatedWith [
a prov:Person, schema:Person ;
{%- if _.store_person != "NA" %}
Expand Down

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