v1.1.3

Fixed

• Bug that caused incorrect median_coverage and mean_read_length in target_summary.csv
• kbases in target_summary.csv now reports total kbases mapped not mean per target.

Changed

• Reconcile with template 5.3.0 and 5.3.1

v1.1.2

Changed

• Updated Ezcharts to v0.11.2.

v1.1.1

Changed

• The name of the column with run IDs from run_ids to run_id.

v1.1.0

Added

• A column with sequencing run IDs to the output summary CSV files.

Changed

• Minor formatting changes of github issue template.

v1.0.1

Fixed

• Overestimation of kbases mapped values.
• Target coverage plots showing only one sample.

v1.0.0

Added

• Memory and CPU requirements for each process.

Changed

• Documentation updated to new format.
• Bumped minimum required Nextflow version to '>=23.04.2'
• Publish target coverage output to output directory.

v0.1.12

Changed

• Enum choices are enumerated in the --help output.
• Enum choices are enumerated as part of the error message when a user has selected an invalid choice.

Fixed

• Inputs file names and directories can now contain spaces.
• Replaced --threads option in fastqingress with hardcoded values to remove warning about undefined param.threads.
• Handling for file and directory names that contain spaces.

v0.1.11

Changed

• Bumped minimum required Nextflow version to 22.10.8

Fixed

• Incompatible default memory options

v0.1.10

Added

• Configuration for running demo data in AWS

v0.1.9

Changed

• Generation report with ezcharts

Fixed

• Memory issue in background calculation with large number of samples