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Condition sheet is no longer required. The sample sheet is now used to indicate condition instead.
For differential expression, the sample sheet must have a condition column to indicate which condition group each sample in the sample sheet belongs to.
Values for the condition may be any two distinct strings, for example: treated/untreated; sample/control etc.
Fixed
Remove default of null for --ref_transcriptome.
Read mapping summary table in the report has correct sample_ids.