v0.3.0

Changed

• Improve differential expression outputs.
• Include transcript and gene count tables in DE_final folder.
• If differential expression subworkflow is used a non redundant transcriptome will be output which includes novel transcripts.
• Added wording to the report about how to identify novel transcripts in the DE tables.
• Nextflow minimum required version to 23.04.2
• --minimap_index_opts parameter has been changed to minimap2_index_opts for consistency.

Added

• An additional gene name column to the differential gene expression results. This is especially handy for transcriptomes where the gene ID is not the same as gene name (e.g. Ensembl).
• Wording to the report about how to identify novel transcripts in the DE tables.