for better look in the runing report

epigen-UCSD · Jan 11, 2018 · 35a0184 · 35a0184
1 parent 5ac7dec
commit 35a0184
Showing 1 changed file with 2 additions and 4 deletions.
diff --git a/modules/ataqc.bds b/modules/ataqc.bds
@@ -124,9 +124,6 @@ string[] ataqc( string fastq1, string fastq2, string bam, string align_log, stri
 		    --chromsizes $chrsz \
 		    --ref $ref_fa \
 		    --tss $tss_enrich \
-		    $param_blacklist \
-		    $param_prom \
-		    $param_enh \
 		    --pbc $pbc_log\
 		    $param_fastq \
 		    --alignedbam $bam \
@@ -136,7 +133,8 @@ string[] ataqc( string fastq1, string fastq2, string bam, string align_log, stri
 		    --finalbam $filt_bam \
 		    --finalbed $bed \
 		    --bigwig $bigwig \
-		    --peaks $peak 
+		    --peaks $peak \
+		    $param_blacklist $param_prom $param_enh
 
 		//sys rm -f test.log test.png