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Add a new species or a new genome
Zhang (Frank) Cheng edited this page Nov 19, 2020
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- Survey to fill: https://docs.google.com/forms/d/e/1FAIpQLScJMXQ_h6o0Z8GkU58z9K3xwoK1RjpIeyDCB66rRVCL2B8BTw/viewform
- Survey results: https://docs.google.com/spreadsheets/d/1I_sfNGBdl3n1ag2LfYbP8FINcd3BTOMEL-yMSdX7qKo/edit?usp=sharing
- if it is a new species, add into
choice_for_species
in themasterseq/model.py
- insert
genome
in db psql:insert into masterseq_app_genomeinfo (id,genome_name,species) values (7,'AgamP4','mosquito');
- In
setqc_app/view.py
add the new options - On TSCC, install the new genome and make TSS file using the script
- In the pipeline's config file, adding the info of the new genome