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sreichl committed Feb 19, 2024
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Expand Up @@ -54,7 +54,7 @@ Three key observations at the end of 2021 motivated me to start this project.
| [Enrichment Analysis](https://github.com/epigen/enrichment_analysis) | Bioinformatics | [![DOI](https://zenodo.org/badge/377527671.svg)](https://zenodo.org/badge/latestdoi/377527671) | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/enrichment_analysis?style=plastic"> |
| [Genome Track Visualization](https://github.com/epigen/genome_tracks) | Bioinformatics | | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/genome_tracks?style=plastic"> |
| [ATAC-seq Processing](https://github.com/epigen/atacseq_pipeline) | Bioinformatics (ATAC-seq) | [![DOI](https://zenodo.org/badge/350342694.svg)](https://zenodo.org/doi/10.5281/zenodo.6323634) | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/atacseq_pipeline?style=plastic"> |
| [scRNA-seq Processing using Seurat](https://github.com/epigen/scrnaseq_processing_seurat) | Bioinformatics (sc/snRNA-seq) | | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/scrnaseq_processing_seurat?style=plastic"> |
| [scRNA-seq Processing using Seurat](https://github.com/epigen/scrnaseq_processing_seurat) | Bioinformatics (sc/snRNA-seq) | [![DOI](https://zenodo.org/badge/468752490.svg)](https://zenodo.org/doi/10.5281/zenodo.10679327) | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/scrnaseq_processing_seurat?style=plastic"> |
| [Differential Analysis using Seurat](https://github.com/epigen/dea_seurat) | Bioinformatics (sc/snRNA-seq) | | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/dea_seurat?style=plastic"> |
| [Perturbation Analysis using Mixscape from Seurat](https://github.com/epigen/mixscape_seurat) | Bioinformatics (sc/snRNA-seq) | [![DOI](https://zenodo.org/badge/481635018.svg)](https://zenodo.org/badge/latestdoi/481635018) | <img alt="GitHub Repo stars" src="https://img.shields.io/github/stars/epigen/mixscape_seurat?style=plastic"> |

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2 changes: 1 addition & 1 deletion README_template.md
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# Analysis & Visualization Snakemake Workflow Using/Powered by PACKAGE for DATA/MODALITY
A [Snakemake](https://snakemake.readthedocs.io/en/stable/) workflow for performing and visualizing analyses of data (e.g., ...) powered by the package [package](https://www.packageURL.org).

This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details and modules check out the project's repository.
This workflow adheres to the module specifications of [MR.PARETO](https://github.com/epigen/mr.pareto), an effort to augment research by modularizing (biomedical) data science. For more details, instructions and modules check out the project's repository. Please consider starring and sharing modules that are useful to you, this helps me in prioritizing my efforts!

**If you use this workflow in a publication, don't forget to give credits to the authors by citing the URL of this (original) repository (and its DOI, see Zenodo badge above -> coming soon).**

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