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Update README.md
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sreichl authored Nov 30, 2023
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Expand Up @@ -8,6 +8,6 @@ You need one configuration file and one annotation file to run the complete work
- read_type: "single" or "paired".
- bam_file: path to the raw/unaligned BAM file.
- pass_qc: number between 0 (not used for downstream steps e.g., quantification) and 1. Every sample with pass_qc>0 is included in the downstream analysis.
- (optional) additional sample metadata columns can be added and indicated for inclusion into the report.
- (optional) additional sample metadata columns can be added and indicated for inclusion in the report.

2 examples (hg38 & mm10) are provided in the test/ directory (COMING SOON)
2 examples (hg38 & mm10) are provided in the .test/ directory and are pre-filled with resource locations from the [respective Zenodo download](../README.md#resources).

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