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Macs2 keep dup configurable (#48)
* Made macs2 keep-dups paramter configurable. Currently set to true default=1 * typo, forgot a comma * Added documentation for keep_dup parameter * another typo fixed * Made removal of duplicates configurable in filtering of reads prior to peak calling. This is now independent of macs2 filtering --------- Co-authored-by: Fangwen Zhao <[email protected]>
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