Change to include updated example command in workflows (#78)

ersilia-os · Dec 10, 2024 · 69970b7 · 69970b7
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commit 69970b7
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Showing 6 changed files with 10 additions and 10 deletions.
diff --git a/.github/workflows/post-model-upload.yml b/.github/workflows/post-model-upload.yml
@@ -119,8 +119,8 @@ jobs:
         run: |
           source activate
           wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/convert_airtable_to_json.py
-          pip install boto3, requests, pyairtable
-          python .github/scripts/convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY
+          pip install boto3 requests pyairtable
+          python convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY
           rm convert_airtable_to_json.py
 
       - name: Update README file

diff --git a/.github/workflows/test-model-pr.yml b/.github/workflows/test-model-pr.yml
@@ -66,7 +66,7 @@ jobs:
             echo "Sample model id selected: $MODEL_ID"
             ersilia -v fetch $MODEL_ID --from_dir .
             ersilia -v serve $MODEL_ID
-            ersilia example -n 5 -f input.csv --predefined
+            ersilia example inputs -n 5 -f input.csv --predefined
             ersilia -v api -i input.csv
             ersilia close
           

diff --git a/.github/workflows/test-model.yml b/.github/workflows/test-model.yml
@@ -86,8 +86,8 @@ jobs:
         run: |
           source activate
           wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/convert_airtable_to_json.py
-          pip install boto3, requests, pyairtable
-          python .github/scripts/convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY
+          pip install boto3 requests pyairtable
+          python convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY
           rm convert_airtable_to_json.py
 
       - name: Update README file
@@ -131,7 +131,7 @@ jobs:
         run: |
             source activate
             ersilia -v serve $MODEL_ID
-            ersilia example -n 5 -f input.csv --predefined
+            ersilia example inputs -n 5 -f input.csv --predefined
             ersilia -v run -i "input.csv" -o "output.csv"
             ersilia close
             cat output.csv

diff --git a/.github/workflows/upload-bentoml.yml b/.github/workflows/upload-bentoml.yml
@@ -103,7 +103,7 @@ jobs:
         run: |
           ersilia -v fetch ${{ github.event.repository.name }} --from_dockerhub
           ersilia -v serve ${{ github.event.repository.name }} --track #Added --track here
-          ersilia example -n 1 -f input.csv --predefined
+          ersilia example inputs -n 1 -f input.csv --predefined
           ersilia -v run -i "input.csv" -o "output.csv"
           ersilia close
           output=$(python .github/scripts/verify_model_outcome.py output.csv)

diff --git a/.github/workflows/upload-ersilia-pack.yml b/.github/workflows/upload-ersilia-pack.yml
@@ -83,7 +83,7 @@ jobs:
         run: |
           ersilia -v fetch ${{ github.event.repository.name }} --from_dockerhub
           ersilia -v serve ${{ github.event.repository.name }} --track #Added --track here
-          ersilia example -n 1 -f input.csv --predefined
+          ersilia example inputs -n 1 -f input.csv --predefined
           ersilia -v run -i "input.csv" -o "output.csv" 
           ersilia close
           output=$(python .github/scripts/verify_model_outcome.py output.csv)

diff --git a/.github/workflows/upload-model-to-s3.yml b/.github/workflows/upload-model-to-s3.yml
@@ -114,8 +114,8 @@ jobs:
         run: |
           source activate
           wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/convert_airtable_to_json.py
-          pip install boto3, requests, pyairtable
-          python .github/scripts/convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY
+          pip install boto3 requests pyairtable
+          python convert_airtable_to_json.py $AIRTABLE_API_KEY $AWS_ACCESS_KEY_ID $AWS_SECRET_ACCESS_KEY
           rm convert_airtable_to_json.py
           
       - name: Update README file