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WIP: update test-model-pr workflow to only use ersilia test command
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DhanshreeA committed Jan 8, 2025
1 parent aaabd61 commit 86ffec5
Showing 1 changed file with 22 additions and 41 deletions.
63 changes: 22 additions & 41 deletions .github/workflows/test-model-pr.yml
Original file line number Diff line number Diff line change
@@ -1,3 +1,5 @@
# This workflow only tests the model on PRs, not on every push to the main branch.
# TODO(@dhanshree): Test ersilia in all supported Python versions
name: Model Test on PR

on:
Expand All @@ -8,10 +10,6 @@ jobs:
if: github.repository != 'ersilia-os/eos-template'
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # [email protected]
with:
lfs: true

# This might stop working in the future, so we need to keep an eye on it
- name: Free Disk Space (Ubuntu)
uses: jlumbroso/free-disk-space@main
Expand All @@ -28,51 +26,31 @@ jobs:
large-packages: true
swap-storage: true

- name: Add conda to system path
run: echo $CONDA/bin >> $GITHUB_PATH

- name: Source conda
run: source $CONDA/etc/profile.d/conda.sh

- name: Set Python to 3.10.10
run: conda install -y python=3.10.10
- uses: actions/[email protected]
with:
lfs: true
- uses: conda-incubator/setup-miniconda@v3
with:
auto-update-conda: true
python-version: "3.10.10"

- name: Install dependencies
run: |
source activate
conda init
conda install git-lfs -c conda-forge
git-lfs install
conda install gh -c conda-forge
python -m pip install 'ersilia[test]'
- name: Install ersilia
run: |
source activate
python --version
echo "After conda init"
conda init
python -m pip install git+https://github.com/ersilia-os/ersilia.git
- name: Predict output
# TODO(@dhanshree) We can potentially restore the retries.
# TODO(@dhanshree) Correct the test command as needed
- name: Test model
env:
MODEL_ID: ${{ github.event.repository.name }}
uses: nick-fields/retry@v3
with:
timeout_minutes: 10
max_attempts: 3
command: |
source activate
echo "Sample model id selected: $MODEL_ID"
ersilia -v fetch $MODEL_ID --from_dir .
ersilia -v serve $MODEL_ID
ersilia example -n 5 -f input.csv --predefined
ersilia -v run -i input.csv
ersilia close
echo "Perform detail check on model: $MODEL_ID"
ersilia -v test $MODEL_ID -d . --inspect -l deep
run: |
ersilia -v test $MODEL_ID -d . --inspect -l deep > test.log
- name: Remove mock.txt if it exists
# Remove mock.txt if it exists
- name: Cleanup
run: |
if [ -f "mock.txt" ]; then
echo "Removing mock.txt file"
Expand All @@ -81,10 +59,13 @@ jobs:
echo "mock.txt not found, skipping removal"
fi
# Upload EOS logs and test logs
- name: Upload log output
if: always()
uses: actions/upload-artifact@83fd05a356d7e2593de66fc9913b3002723633cb #pin v3.1.1
uses: actions/upload-artifact@v4.5.0
with:
name: debug-logs
retention-days: 14
path: /home/runner/eos/*.log
path: |
/home/runner/eos/*.log
./*.log

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