Rename files in eos3kcw #2
Workflow file for this run
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| name: Model Test on PR | |
| on: | |
| pull_request: | |
| jobs: | |
| test: | |
| if: github.repository != 'ersilia-os/eos-template' | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@8e5e7e5ab8b370d6c329ec480221332ada57f0ab # [email protected] | |
| with: | |
| lfs: true | |
| - name: Add conda to system path | |
| run: echo $CONDA/bin >> $GITHUB_PATH | |
| - name: Source conda | |
| run: source $CONDA/etc/profile.d/conda.sh | |
| - name: Set Python to 3.10.10 | |
| run: | |
| conda install -y python=3.10.10 | |
| - name: Install dependencies | |
| run: | | |
| source activate | |
| conda init | |
| conda install git-lfs -c conda-forge | |
| git-lfs install | |
| conda install gh -c conda-forge | |
| - name: Install ersilia | |
| run: | | |
| source activate | |
| python --version | |
| echo "After conda init" | |
| conda init | |
| python -m pip install git+https://github.com/ersilia-os/ersilia.git | |
| - name: Check metadata before updating to AirTable | |
| id: check-metadata | |
| env: | |
| USER_NAME: ${{ github.event.pull_request.head.repo.owner.login }} | |
| BRANCH: "main" | |
| REPO_NAME: ${{ github.event.repository.name }} | |
| run: | | |
| source activate | |
| wget https://raw.githubusercontent.com/ersilia-os/ersilia/master/.github/scripts/update_metadata_to_airtable.py | |
| python3 update_metadata_to_airtable.py $USER_NAME $REPO_NAME $BRANCH | |
| - name: Predict output | |
| env: | |
| MODEL_ID: ${{ github.event.repository.name }} | |
| run: | | |
| source activate | |
| echo "Sample model id selected: $MODEL_ID" | |
| ersilia -v fetch $MODEL_ID --repo_path . | |
| ersilia -v serve $MODEL_ID | |
| ersilia sample -n 5 -f input.csv | |
| ersilia -v api -i input.csv | |
| ersilia close | |
| - name: Upload log output | |
| uses: actions/upload-artifact@83fd05a356d7e2593de66fc9913b3002723633cb #pin v3.1.1 | |
| with: | |
| name: debug-logs | |
| retention-days: 1 | |
| path: /home/runner/eos/console.log |