Merge branch 'master' into 1069-batch-add-versioning-in-docker-builds

ersilia-os · Jan 3, 2025 · bef315c · bef315c
2 parents 972b2b7 + c41fb34
commit bef315c
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Showing 244 changed files with 5,549 additions and 2,126 deletions.
diff --git a/.github/scripts/airtableops.py b/.github/scripts/airtableops.py
@@ -1,13 +1,12 @@
 import os
 
-import requests
 import pyairtable
+import requests
 import yaml
 
-from ersilia.hub.content.card import BaseInformation
-from ersilia.hub.content.card import RepoMetadataFile
-from ersilia.utils.terminal import run_command
+from ersilia.hub.content.card import BaseInformation, RepoMetadataFile
 from ersilia.utils.logging import make_temp_dir
+from ersilia.utils.terminal import run_command
 
 GITHUB_ORG = "ersilia-os"
 AIRTABLE_MODEL_HUB_BASE_ID = "appgxpCzCDNyGjWc8"
@@ -121,7 +120,7 @@ def __init__(self, model_id, config_json=None):
         self.model_id = model_id
 
     def read_information(self):
-        print ("Cannot read directly from README file. Using AirTable instead")
+        print("Cannot read directly from README file. Using AirTable instead")
         am = AirtableMetadata(model_id=self.model_id)
         bi = am.read_information()
         print(bi.as_dict())

diff --git a/.github/scripts/convert_airtable_to_json.py b/.github/scripts/convert_airtable_to_json.py
@@ -1,9 +1,10 @@
-import os
 import json
 import logging
+import os
+
 import boto3
-from botocore.exceptions import ClientError, NoCredentialsError
 import requests
+from botocore.exceptions import ClientError, NoCredentialsError
 
 AIRTABLE_MODEL_HUB_BASE_ID = "appgxpCzCDNyGjWc8"
 AIRTABLE_TABLE_ID = "tblZGe2a2XeBxrEHP"

diff --git a/.github/scripts/generate_eos_identifier.py b/.github/scripts/generate_eos_identifier.py
@@ -1,8 +1,8 @@
+import json
+import os
 import random
 import string
-import json
 import subprocess
-import os
 
 
 def run_command_check_output(cmd):

diff --git a/.github/scripts/place_a_dockerfile_in_current_eos_repo.py b/.github/scripts/place_a_dockerfile_in_current_eos_repo.py
@@ -1,7 +1,8 @@
 import os
+import shutil
 import sys
+
 import requests
-import shutil
 
 BUILD_VERSIONS = ["ersiliapack", "legacy-bentoml", "multistage-condapack"]
 ENV_TYPES = ["conda", "pip"]

diff --git a/.github/scripts/static_version_writer.py b/.github/scripts/static_version_writer.py
@@ -12,7 +12,7 @@ def wrapper(package_path):
         with open(toml_path, "r") as f:
             toml_content = f.read()
         toml_content = re.sub(
-            'version\s=\s"[0-9\.]+"', f'version = "{version}"', toml_content
+            r'version\s=\s"[0-9\.]+"', f'version = "{version}"', toml_content
         )
         with open(toml_path, "w") as f:
             f.write(toml_content)