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Bug fixes h5 #1547
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Merged
Bug fixes h5 #1547
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@Abellegese could you look at the failing Circle CI test? |
I tested this PR on eos3ae6 with the DILI train dataset and can confirm that not only do the None values serialize correctly now (a single None value per column instead of a list in a single column), the binary search approach has also made processing significantly faster. |
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Thank you for taking your time to contribute to Ersilia, just a few checks before we proceed
Description
Fix for parsing and formatting of h5/csv files. It also has a binary splitting approach over the one by one.
Related to ersilia-os/zairachem-docker#7 (comment)