Master to be (#82)

* add docs * docs * add docs * add docs * add example in the docs * add the docs * change the theme in docs * add the docs * add docs * add the docs * add the docs * algorithm and example in docs * add newest version * newest version * add png images * removed version req for SpinGlass packages * update julia version * add some pictures to docs * remove old files * update CI workflow * update ignore * cleanup test launcher * update ignore * cleanup of project deps * udpate documenter workflow * uncomment deployment * update reexport * cleanup docs env * make docs fix * remove files used for build * update engine version --------- Co-authored-by: annamariadziubyna <[email protected]> Co-authored-by: annamariadziubyna <[email protected]> Co-authored-by: tomsmierz <[email protected]>
euro-hpc-pl · May 2, 2024 · 7afba4d · 7afba4d
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diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml
@@ -1,37 +1,41 @@
 name: CI
 on:
-  - push
-  - pull_request
+  pull_request:
+    branches:
+      - master
+  workflow_dispatch:
 jobs:
   test:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }}
-    runs-on: ${{ matrix.os }}
+    name: Julia ${{ matrix.version }}
+    runs-on: [self-hosted,titan,gpu]
     strategy:
       fail-fast: false
       matrix:
         version:
-          - '1.7'
-          - '1.8'
-        os:
-          - ubuntu-latest
-          - macOS-latest
-        arch:
-          - x64
+          - '1.9'
+          - '1.10'
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v4
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
-          arch: ${{ matrix.arch }}
       - uses: julia-actions/julia-buildpkg@latest
       - uses: julia-actions/julia-runtest@latest
         env:
           JULIA_NUM_THREADS: 4
       - uses: julia-actions/julia-processcoverage@v1
-      # - uses: codecov/codecov-action@v1
-      #   with:
-      #     file: lcov.info
       - uses: coverallsapp/github-action@master
         with:
           github-token: ${{ secrets.GITHUB_TOKEN }}
           path-to-lcov: lcov.info
+          parallel: true
+          flag-name: run-${{ matrix.version }}
+  finish:
+    needs: test
+    runs-on: [self-hosted,titan]
+    steps:
+      - name: Close parallel build
+        uses: coverallsapp/github-action@v1
+        with:
+          parallel-finished: true
+          carryforward: "run-1.9,run-1.10"
diff --git a/.github/workflows/Documenter.yml b/.github/workflows/Documenter.yml
@@ -14,10 +14,18 @@ jobs:
       - uses: actions/checkout@v2
       - uses: julia-actions/setup-julia@latest
         with:
-          version: '1.5'
-      - name: Install dependencies
-        run: julia --project=docs/ -e 'using Pkg; Pkg.add("Documenter"); Pkg.add("DocumenterCitations"); Pkg.add(PackageSpec(path=pwd())); Pkg.instantiate();'
+          version: '1.10'
       - name: Build and deploy
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
-        run: julia --project=docs/ docs/make.jl
+        run: |
+          julia --project -e '
+            println("--- :julia: Instantiating project")
+            using Pkg
+            Pkg.instantiate()
+            Pkg.activate("docs")
+            Pkg.instantiate()
+            push!(LOAD_PATH, @__DIR__)
+
+            println("+++ :julia: Building documentation")
+            include("docs/make.jl")'
diff --git a/.gitignore b/.gitignore
@@ -10,3 +10,7 @@ docs/build
 **/.DS_Store
 Manifest.toml
 sysimage.so
+docs/build
+docs/src/sge
+docs/src/sgn
+docs/src/sgt
diff --git a/Project.toml b/Project.toml
@@ -1,30 +1,24 @@
 name = "SpinGlassPEPS"
 uuid = "2c514f87-1261-494e-8566-326879aaf4fe"
-version = "0.3.0"
+version = "1.0.0"
 
 [deps]
 Reexport = "189a3867-3050-52da-a836-e630ba90ab69"
 SpinGlassEngine = "0563570f-ea1b-4080-8a64-041ac6565a4e"
+SpinGlassExhaustive = "a894d7c4-7f54-4100-9d77-d00d924adeb3"
 SpinGlassNetworks = "b7f6bd3e-55dc-4da6-96a9-ef9dbec6ac19"
 SpinGlassTensors = "7584fc6a-5a23-4eeb-8277-827aab0146ea"
-Colors = "5ae59095-9a9b-59fe-a467-6f913c188581"
-Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
-DocumenterTools = "35a29f4d-8980-5a13-9543-d66fff28ecb8"
-PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0"
-PyPlot = "d330b81b-6aea-500a-939a-2ce795aea3ee"
 
 [compat]
 Reexport = "1.0"
-SpinGlassEngine = "0.4"
-SpinGlassNetworks = "0.3"
-SpinGlassTensors = "0.3"
-julia = "1.7, 1.8"
+SpinGlassEngine = "1.0.1"
+SpinGlassExhaustive = "1.0.0"
+SpinGlassNetworks = "1.1.2"
+SpinGlassTensors = "1.1.1"
+julia = "1.9, 1.10"
 
 [extras]
-Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
 Pkg = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f"
 
-
-
 [targets]
-test = ["Test", "Pkg"]
+test = ["Pkg"]
diff --git a/docs/Project.toml b/docs/Project.toml
@@ -1,12 +1,21 @@
 [deps]
 Documenter = "e30172f5-a6a5-5a46-863b-614d45cd2de4"
 DocumenterTools = "35a29f4d-8980-5a13-9543-d66fff28ecb8"
+Graphs = "86223c79-3864-5bf0-83f7-82e725a168b6"
+LabelledGraphs = "605abd48-4d17-4660-b914-d4df33194460"
+MetaGraphs = "626554b9-1ddb-594c-aa3c-2596fe9399a5"
 SpinGlassEngine = "0563570f-ea1b-4080-8a64-041ac6565a4e"
+SpinGlassExhaustive = "a894d7c4-7f54-4100-9d77-d00d924adeb3"
 SpinGlassNetworks = "b7f6bd3e-55dc-4da6-96a9-ef9dbec6ac19"
-SpinGlassPEPS = "2c514f87-1261-494e-8566-326879aaf4fe"
 SpinGlassTensors = "7584fc6a-5a23-4eeb-8277-827aab0146ea"
 
 [compat]
-SpinGlassEngine = "0.1"
-SpinGlassNetworks = "0.1"
-SpinGlassTensors = "0.1"
+Documenter = "1.4.0"
+DocumenterTools = "0.1.19"
+Graphs = "1.9.0"
+LabelledGraphs = "0.4.4"
+MetaGraphs = "0.7.2"
+SpinGlassEngine = "1.0.1"
+SpinGlassNetworks = "1.1.2"
+SpinGlassTensors = "1.1.1"
+julia = "1.9, 1.10"
diff --git a/docs/juliadynamics-dark.scss b/docs/juliadynamics-dark.scss