Rename thre to full threshold

flatironinstitute · Nov 13, 2023 · 94e7c85 · 94e7c85
1 parent d33c039
commit 94e7c85
Showing 1 changed file with 3 additions and 3 deletions.
diff --git a/caiman/source_extraction/volpy/atm.py b/caiman/source_extraction/volpy/atm.py
@@ -280,7 +280,7 @@ def denoise_spikes(trace, sampleRate, windowLength, superfactor, threshs=(.4, .6
 
                 tlimit = len(trace)
 
-                thre = threshold_sets[th]
+                threshold = threshold_sets[th]
 
                 # check validity of spike kernel by detecting pre-spike ramp
                 # if the shape of first 50 spikes are suspicious, it will return an empty array
@@ -302,8 +302,8 @@ def test_spikeshape(time, tcourse, tcourse_med, tcourse_std, regress_matrix):
 
                     return (s, p)
 
-                spiketimes = get_spiketimes(high_freq, high_freq_med + thre * high_freq_std,
-                                            trace, trace_med + thre * trace_std, tlimit)
+                spiketimes = get_spiketimes(high_freq, high_freq_med + threshold * high_freq_std,
+                                            trace, trace_med + threshold * trace_std, tlimit)
 
                 spikebins = 50
                 spikenrep = (len(spiketimes) // spikebins) + int((len(spiketimes) % spikebins) > 0)