[24.2] RegexParameterValidatorModel.regex_validation fails for bcftools annotate

[mvdbeek]

... and a bunch of other IUC tests.

Traceback (most recent call last):
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/web/framework/decorators.py", line 346, in decorator
    rval = func(self, trans, *args, **kwargs)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/webapps/galaxy/api/tools.py", line 596, in create
    return self.service._create(trans, payload, **kwd)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/webapps/galaxy/services/tools.py", line 172, in _create
    vars = tool.handle_input(
           ^^^^^^^^^^^^^^^^^^
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/__init__.py", line 1963, in handle_input
    expanded = self.expand_incoming(request_context, incoming=incoming, input_format=input_format)
               ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/__init__.py", line 1856, in expand_incoming
    params, errors = self._populate(request_context, expanded_incoming, input_format)
                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/__init__.py", line 1902, in _populate
    populate_state(
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/__init__.py", line 431, in populate_state
    _populate_state_legacy(
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/__init__.py", line 635, in _populate_state_legacy
    _populate_state_legacy(
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/__init__.py", line 673, in _populate_state_legacy
    check_param(request_context, input, param_value, context, simple_errors=simple_errors)
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/__init__.py", line 294, in check_param
    param.validate(value, trans)
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/basic.py", line 422, in validate
    return super().validate(value, trans)
           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/basic.py", line 326, in validate
    validator.validate(value, trans)
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tools/parameters/validation.py", line 80, in validate
    RegexParameterValidatorModel.regex_validation(self.expression, value, self)
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tool_util/parser/parameter_validators.py", line 188, in regex_validation
    raise_error_if_valiation_fails(match is not None, validator, value_to_show=val)
  File "/tmp/tmp6qmxwayt/galaxy-dev/lib/galaxy/tool_util/parser/parameter_validators.py", line 673, in raise_error_if_valiation_fails
    assert message
           ^^^^^^^
AssertionError

from https://github.com/galaxyproject/tools-iuc/actions/runs/12668894193/job/35305447728#step:8:40790

[jmchilton]

I see the issue - I'll open a fix. Sorry about that.

[mvdbeek]

Fixed in #19387