fixed parents for #27678

geneontology · Jan 30, 2025 · 700e6f6 · 700e6f6
1 parent 17f7552
commit 700e6f6
Showing 1 changed file with 20 additions and 15 deletions.
diff --git a/src/ontology/go-edit.obo b/src/ontology/go-edit.obo
@@ -33331,7 +33331,7 @@ synonym: "reduced nicotinamide-adenine dinucleotide (phosphate) dehydrogenase ac
 synonym: "viologen accepting pyridine nucleotide oxidoreductase activity" NARROW [EC:1.6.5.2]
 synonym: "vitamin K reductase activity" NARROW [EC:1.6.5.2]
 synonym: "vitamin-K reductase activity" NARROW [EC:1.6.5.2]
-xref: EC:1.6.5.2
+xref: EC:1.6.5.2 {source="skos:exactMatch"}
 xref: MetaCyc:NQOR-RXN
 xref: UM-BBD_reactionID:r0227
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
@@ -33427,9 +33427,9 @@ synonym: "TPNH dehydrogenase activity" RELATED [EC:1.6.99.1]
 synonym: "TPNH-diaphorase activity" RELATED [EC:1.6.99.1]
 synonym: "triphosphopyridine diaphorase activity" RELATED [EC:1.6.99.1]
 synonym: "triphosphopyridine nucleotide diaphorase activity" RELATED [EC:1.6.99.1]
-xref: EC:1.6.99.1
+xref: EC:1.6.99.1 {source="skos:exactMatch"}
 xref: MetaCyc:NADPH-DEHYDROGENASE-RXN
-xref: RHEA:13149
+xref: RHEA:13149 {source="skos:exactMatch"}
 is_a: GO:0016651 ! oxidoreductase activity, acting on NAD(P)H
 
 [Term]
@@ -33442,7 +33442,8 @@ synonym: "quinone oxidoreductase activity" BROAD [EC:1.6.5.5]
 synonym: "zeta-crystallin activity" NARROW [EC:1.6.5.5]
 xref: EC:1.6.5.5
 xref: MetaCyc:QOR-RXN
-xref: RHEA:14269
+xref: RHEA:14269 {source="skos:exactMatch"}
+is_a: GO:0003959 ! NADPH dehydrogenase activity
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
 
 [Term]
@@ -75832,6 +75833,7 @@ synonym: "ubiquinone reductase activity" EXACT []
 xref: EC:7.1.1.2
 xref: MetaCyc:NADH-DEHYDROG-A-RXN
 xref: RHEA:29091
+is_a: GO:0003954 ! NADH dehydrogenase activity
 is_a: GO:0009055 ! electron transfer activity
 is_a: GO:0015078 ! proton transmembrane transporter activity
 is_a: GO:0015453 ! oxidoreduction-driven active transmembrane transporter activity
@@ -82674,6 +82676,7 @@ xref: MetaCyc:RXN0-271 {source="skos:narrowMatch"}
 xref: MetaCyc:RXN0-7385 {source="skos:exactMatch"}
 xref: RHEA:46164 {source="skos:exactMatch"}
 is_a: GO:0003955 ! NAD(P)H dehydrogenase (quinone) activity
+is_a: GO:0003959 ! NADPH dehydrogenase activity
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/28526" xsd:anyURI
 
 [Term]
@@ -123822,7 +123825,7 @@ is_a: GO:0016651 ! oxidoreductase activity, acting on NAD(P)H
 id: GO:0016656
 name: monodehydroascorbate reductase (NADH) activity
 namespace: molecular_function
-def: "Catalysis of the reaction: NADH + H+ + 2 monodehydroascorbate = NAD+ + 2 ascorbate." [EC:1.6.5.4]
+def: "Catalysis of the reaction: 2 monodehydro-L-ascorbate radical + NADH + H+ = 2 L-ascorbate + NAD+." [RHEA:14581]
 synonym: "AFR" RELATED [EC:1.6.5.4]
 synonym: "AFR-reductase activity" RELATED [EC:1.6.5.4]
 synonym: "ascorbate free radical reductase activity" RELATED [EC:1.6.5.4]
@@ -123838,9 +123841,9 @@ synonym: "NADH:monodehydroascorbate oxidoreductase activity" RELATED [EC:1.6.5.4
 synonym: "NADH:semidehydroascorbic acid oxidoreductase activity" RELATED [EC:1.6.5.4]
 synonym: "SDA reductase activity" RELATED [EC:1.6.5.4]
 synonym: "semidehydroascorbate reductase activity" RELATED [EC:1.6.5.4]
-xref: EC:1.6.5.4
+xref: EC:1.6.5.4 {source="skos:exactMatch"}
 xref: MetaCyc:1.6.5.4-RXN
-xref: RHEA:14581
+xref: RHEA:14581 {source="skos:exactMatch"}
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
 
 [Term]
@@ -134076,7 +134079,7 @@ synonym: "NADPH:p-benzoquinone oxidoreductase activity" RELATED [EC:1.6.5.6]
 xref: EC:1.6.5.6
 xref: KEGG_REACTION:R05244
 xref: MetaCyc:1.6.5.6-RXN
-xref: RHEA:23488
+xref: RHEA:23488 {source="skos:exactMatch"}
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
 
 [Term]
@@ -309194,11 +309197,11 @@ property_value: term_tracker_item "https://github.com/geneontology/go-ontology/i
 id: GO:0050136
 name: NADH:ubiquinone reductase (non-electrogenic) activity
 namespace: molecular_function
-def: "Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol." [EC:1.6.5.9, GOC:mah, RHEA:46160]
+def: "Catalysis of the reaction: NADH + H+ + a quinone = NAD+ + a quinol." [RHEA:46160]
 synonym: "NADH dehydrogenase (quinone) activity" RELATED []
-xref: EC:1.6.5.9
+xref: EC:1.6.5.9 {source="skos:exactMatch"}
 xref: MetaCyc:1.6.99.5-RXN
-xref: RHEA:46160
+xref: RHEA:46160 {source="skos:exactMatch"}
 is_a: GO:0003954 ! NADH dehydrogenase activity
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
 property_value: term_tracker_item "https://github.com/geneontology/go-ontology/issues/25784" xsd:anyURI
@@ -316029,16 +316032,16 @@ id: GO:0050625
 name: 2-hydroxy-1,4-benzoquinone reductase activity
 namespace: molecular_function
 alt_id: GO:0018540
-def: "Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+." [EC:1.6.5.7, RHEA:12428]
+def: "Catalysis of the reaction: 2-hydroxy-1,4-benzoquinone + 2 H+ + NADH = benzene-1,2,4-triol + NAD+." [RHEA:12428]
 synonym: "1,2,4-trihydroxybenzene:NAD oxidoreductase activity" RELATED [EC:1.6.5.7]
 synonym: "1,2,4-trihydroxybenzene:NAD+ oxidoreductase activity" RELATED [EC:1.6.5.7]
 synonym: "2-hydroxy-1,4-benzoquinone:NADH oxidoreductase activity" RELATED [EC:1.6.5.7]
 synonym: "hydroxybenzoquinone reductase activity" RELATED [EC:1.6.5.-]
 synonym: "NADH:2-hydroxy-1,4-benzoquinone oxidoreductase activity" RELATED [EC:1.6.5.7]
-xref: EC:1.6.5.7
+xref: EC:1.6.5.7 {source="skos:exactMatch"}
 xref: KEGG_REACTION:R05399
 xref: MetaCyc:1.6.5.7-RXN
-xref: RHEA:12428
+xref: RHEA:12428 {source="skos:exactMatch"}
 xref: UM-BBD_reactionID:r0667
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
 
@@ -439060,8 +439063,10 @@ replaced_by: GO:0008753
 id: GO:0103036
 name: NADH:menaquinone oxidoreductase activity
 namespace: molecular_function
-def: "Catalysis of the reaction: 5 H+ + NADH + a menaquinone = 4 H+ + NAD + a menaquinol." [GOC:pz]
+def: "Catalysis of the reaction: 5 H+ + NADH + a menaquinone = 4 H+ + NAD + a menaquinol." [GOC:pz, RHEA:29099]
 xref: MetaCyc:RXN0-5388
+xref: RHEA:29099
+is_a: GO:0003954 ! NADH dehydrogenase activity
 is_a: GO:0016655 ! oxidoreductase activity, acting on NAD(P)H, quinone or similar compound as acceptor
 
 [Term]